Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02588 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCTCAGTTTGAGGATTCACCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAGTCTGTTCACATTACTCAGACCTTCAATTCGCTCAGCTTTTCATCCCCTCCGTCTGTTTTCACATCACCCCATGTCAACTGTCACAGGGAATCCAGATTCCTCAGGAGGCATAACCTTTTGGATGCATCCAAACCTAAGGGCTCATCTGAAGATATAAATAATGTTTATTCATGTGAAAAGACTCCAGCAGATTCAACTCAGCCATGTCATGAATCAAGTGAGCCGCAGGAAAATACCAATCCAAATATTTCCATAAGAGATGCCTCAAACGAGCCATGTAATGAAAACCCAAATATCTCAATTGAGGTCCCACAAGGCCTAAAATATAATTTGGCTAGCCCAGGGTATGATCCTGTGATCTCTGTTGATGAGGCTGACTCTCTTTTGGAACTGCCGGGCAAGCCAGGATCAGATGTTGCCTATGTTCCAGATAACTCTGAAAAGAATTCAATTGAGGGTGAAATGCATCCTCCAGGTTTATGTCAAAATGAGGAAAAAATTGAAGGCCCAGATTGTGGTGTGGATGATTTAATTACTGAAGCCTCTGATCTGTTAATGTTTAGTCCCCCAAATATGACAGAAGCTTTTAAGGATATAAATAAACAATTAAATCCTTCTACAAAGCTTACCAATTTTAGGACTTTGTTACAACAATCTGCCACCAATGATGGTCAAAAAATGCACATTGTTGATGCAGTCGCTTCTGGTTCAGAACATGAAATTGAAAATCATCCTTGTGAATCAGGAGCAGCCACAGACACAGTTCAGAGACAGGACAATCATACCAATGTTGCTTTGGTGGCTAGCAATCCAACTGAGAAAATTGATGATAAGCTTCTTTATGTGACACACCGTGGTATACGGAGACGCTGTCTAGATTTTGAGATGGCCAGTGTGCAAAGGAAGAACCTAGATGGTAAATCACACAACAATTCTGGTACAGAAAAATCTGATGAGATGGATGTTAGTAAAGGAAAGCAAGTACTCCCCATAAAACATAGTGGGGATTCACGGAAGTGTGTTTTGCCTGGAATTGGTTTGCACTTGAATGCACTTGCAACCTTAAATGATTGCAAAAACATAAAAATTGAGAAGTTGCTATCTGGAAGGCAACCTAACATGCCCAGCTCCTCTTCATCCTTGCAACTTTCTGCAAGCCAAGAACATCAACTATCATTGGTGCCTGTATCAGTGGAAAAAGATTTGGAGCTATCAGAGAATGAAGTTCAGCCTGGTGAAGATTGTACCCAGCCTTTGGTTCTCATGGCTGGTGAAGATTTCCAGCAGAATAGTCCAAAAAAGAAAAGGCGCAGGTTAGAACCAGATGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAGTGTTTAAAGCTTTATTGTGAGTGCTTTGCTGCGGGAGTCTACTGCATAGAGCCCTGTTCATGTCGTGATTGCTTCAACAAGCCTATTCATGTTGACACCGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGAAATCCACTTGCTTTTGCTCCTAAAGTCATACGGAGTTCTGATTCTGCACCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCCCGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCTTAAAGAAATACTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGCAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCCTTCTGGAATAGAAGCCAAGCCCGAAGAAGAAACAGAAGCATGTGAAAAGGGTGTGATGGAAAATGCTTCACATAAAACTGAAACACAGAATATTGAAGACCATCCAGACCATGCTCTTCCTACAACACCATTACGTCTTTCCAGATCATTGCTCCCATTACCCTTTTCATCAAAGGGCAAGCCACCAAGATCTTTTGTTACTACCATCTCCAGTTCTGGATTGTTTGTGAGCCAAAAGCTCGGGAAATCTAGTGCTCCGCGGTCTCAACCTAAATTTGACAAGCCTTTGCAAACTGTTCCGGATGATGACTCTCCTGTCACCTGCATCAAAACTTCTTCTCCAAATGGCAAGAGGATCTCCTCTCCTAATTGTGACGTGGGATCATCTCCTACTCGCAGAGGTGGGAGGAAGTTGATTTTACAATCTATCCCTTCCTTTCCTTCTCTCACCCCTCACAATCTTCGGAGTGACTGA 2316 0.424 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHITQTFNSLSFSSPPSVFTSPHVNCHRESRFLRRHNLLDASKPKGSSEDINNVYSCEKTPADSTQPCHESSEPQENTNPNISIRDASNEPCNENPNISIEVPQGLKYNLASPGYDPVISVDEADSLLELPGKPGSDVAYVPDNSEKNSIEGEMHPPGLCQNEEKIEGPDCGVDDLITEASDLLMFSPPNMTEAFKDINKQLNPSTKLTNFRTLLQQSATNDGQKMHIVDAVASGSEHEIENHPCESGAATDTVQRQDNHTNVALVASNPTEKIDDKLLYVTHRGIRRRCLDFEMASVQRKNLDGKSHNNSGTEKSDEMDVSKGKQVLPIKHSGDSRKCVLPGIGLHLNALATLNDCKNIKIEKLLSGRQPNMPSSSSSLQLSASQEHQLSLVPVSVEKDLELSENEVQPGEDCTQPLVLMAGEDFQQNSPKKKRRRLEPDGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCRDCFNKPIHVDTVLQTRQQIESRNPLAFAPKVIRSSDSAPEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVPSGIEAKPEEETEACEKGVMENASHKTETQNIEDHPDHALPTTPLRLSRSLLPLPFSSKGKPPRSFVTTISSSGLFVSQKLGKSSAPRSQPKFDKPLQTVPDDDSPVTCIKTSSPNGKRISSPNCDVGSSPTRRGGRKLILQSIPSFPSLTPHNLRSD 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02588 771 MobiDBLite consensus disorder prediction 338 360 - -
Phco6g02588 771 ProSiteProfiles CRC domain profile. 482 607 IPR005172 -
Phco6g02588 771 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 766 IPR044522 GO:0003700
Phco6g02588 771 SMART CXC_2 567 608 IPR033467 -
Phco6g02588 771 SMART CXC_2 481 522 IPR033467 -
Phco6g02588 771 MobiDBLite consensus disorder prediction 636 656 - -
Phco6g02588 771 MobiDBLite consensus disorder prediction 718 742 - -
Phco6g02588 771 MobiDBLite consensus disorder prediction 694 749 - -
Phco6g02588 771 MobiDBLite consensus disorder prediction 73 134 - -
Phco6g02588 771 MobiDBLite consensus disorder prediction 82 134 - -
Phco6g02588 771 MobiDBLite consensus disorder prediction 461 483 - -
Phco6g02588 771 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 570 605 IPR005172 -
Phco6g02588 771 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 484 519 IPR005172 -
Phco6g02588 771 MobiDBLite consensus disorder prediction 464 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02588 Phco-Chr6 47483882 47489154 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Phco6g02588 TCR 2.3e-11 No_clan