Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02574 ATGGAAGTGTGGCTATGGAGGCATGGTAATTCCTCCATTGGGAAAGCTACACCTGAGAAACCACACAGAAGAGGAAATAAAAAGAAAGTGACAAAAAGTCAAAGGCACGCCCATCTTGTTTCACAGCTAGAATTAAGAAGGGTAGCTAGATCAAAGCTTGAGCTCTGCATACAATCCAACATGAATCCTCAAGGTCGAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTTATGCTGGCTATGATCCGCAGCCAGTAATGATTGTTCCTCAACCAATTGAGGGGCTTCATGAAACTGGTCTTCCACCATTCCTCACGAAAACATACGACATTGTTGATGACCATTCCACTAACCATATAATTTCCTGGAGCACGGGGAACAACAGCTTCATAGTGTGGGATCCACAGGCCTTTTCCATAACCCTTCTGCCCAAGTTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAATTTGCTAATGAGATGTTTCTTAGAGGGAAAAGGATTCTTTTGAAGAACATTAGAAGGCGGAAAACAAATCATCAATCTCATGCGATGCAGCAAGGTGTGGATCCTTGTGTTGAGGTGGGACAGTTTGGATTAGATAGAGAAGTTGATAGGTTGAAGCGTGACAGGCAAGTTCTTATGGTGGAGTTGGTGAAACTCAGACAACAGCAGCAGAATACTAGAGTTCACATTCAAGCAATGGAAGGAAGGCTTAAAAGGACTGAACAGAAACAGCAACAAACGATGAATTTCTTGGCCAGGGCTATGCAGAATCCCAACTTCATGCAACAACTGGTTCAGCAAAAGGAGCTGAGAAAGGAGCTCGAGGAAGGTTTTCCGAAGAAGAGGAGGAGTCTTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGGAGAGTTAGATTGCGCTGAAGAGTACTCAAGTTTCATTGAACTTGAACCACAAGTATACACTGACAGGGTATTGGAGTTTGAGGTACCTGATCTTGACCTTGGTTTGAATCTGGAGGAGCAAACTGGAAGGCAAAAGAGAATGGAGGGAGATTATATTCAACTTGAAAGTATAGATAAAGATATTGATGAGGTGTTTTGGCAAGATTTGCTCAAAGAGGACATTGAAAATCAAGGTGTACTAGGTGTTGATGTATTGGCTCAGCAACTTGGTTATTTGGCTTCTATTTTGTTGCAATTAGTTGTGGAAGAACTCTTTTGTTTTGGTACATATGATTTCATGCCATTTGCGATCTCCACTTCAAGAGGCATCTCTTTAGAAGGGCTTCTTGATCTTGAAGTTTCAACCTCCCTCAAATCTTCAGAGTTTCAAACGTCTCTCAAACCAGTTCCAAAGAAGAGCTCCTTGTCGTTGTTGCGGTTCTTCACCCTTTTACACTCCCTGTGTTCCCTTCACGAGCTCTCGAGATTTAAAAAACCTATCTCCGCTTTTGCCTTCGGATCAAACCCTTTTGATCTCTCCGCTTGTTTTCGCGCAATGCCGTCGCCCTGA 1557 0.4271 MEVWLWRHGNSSIGKATPEKPHRRGNKKKVTKSQRHAHLVSQLELRRVARSKLELCIQSNMNPQGRVKEEFLGESSSFYAGYDPQPVMIVPQPIEGLHETGLPPFLTKTYDIVDDHSTNHIISWSTGNNSFIVWDPQAFSITLLPKFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGKRILLKNIRRRKTNHQSHAMQQGVDPCVEVGQFGLDREVDRLKRDRQVLMVELVKLRQQQQNTRVHIQAMEGRLKRTEQKQQQTMNFLARAMQNPNFMQQLVQQKELRKELEEGFPKKRRSLDQGPSNVVEVGELDCAEEYSSFIELEPQVYTDRVLEFEVPDLDLGLNLEEQTGRQKRMEGDYIQLESIDKDIDEVFWQDLLKEDIENQGVLGVDVLAQQLGYLASILLQLVVEELFCFGTYDFMPFAISTSRGISLEGLLDLEVSTSLKSSEFQTSLKPVPKKSSLSLLRFFTLLHSLCSLHELSRFKKPISAFAFGSNPFDLSACFRAMPSP 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02574 518 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 91 309 IPR027725 -
Phco6g02574 518 Coils Coil 222 242 - -
Phco6g02574 518 Gene3D - 97 196 IPR036388 -
Phco6g02574 518 Pfam HSF-type DNA-binding 105 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02574 518 ProSitePatterns HSF-type DNA-binding domain signature. 144 168 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02574 518 MobiDBLite consensus disorder prediction 1 34 - -
Phco6g02574 518 SUPERFAMILY "Winged helix" DNA-binding domain 101 194 IPR036390 -
Phco6g02574 518 SMART hsfneu3 101 194 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02574 518 PRINTS Heat shock factor (HSF) domain signature 156 168 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02574 518 PRINTS Heat shock factor (HSF) domain signature 143 155 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02574 518 PRINTS Heat shock factor (HSF) domain signature 105 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02574 518 FunFam Heat shock transcription factor 1 98 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02574 Phco-Chr6 47301138 47309547 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco6g02574 HSF_DNA-bind 2.1e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00157 4 939717 942387 Phco6g02574 6 47301138 47309547 PCT