Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02569 ATGGAGGAAGAGAGCGAATGCTTCGAGTGCCTCCAACTTCGAATAAAGTCGGATTTCTCGGAGCAAGTCTTCTTCAATTATGCCATCTCCAATTCTGCTTTTCCTTTCGGATCCTCAGCTATCGTCAATATTTCTGGTACAACTGATGGCGAAGCTTCCGGCGGTCAATTTATATTGCAATACATGCCGAGTCGTGATAAGAATTGTTTTATCAATTATGTAAATGAATATAGTTTGGACAGTGGTGAAATCACTACCAGGAGTGGTGATCCTGATATTGGTGGAAGTAAAGATAATAATGTTTTTAAGGGTAGAATTACTTCATCAGATGATTCTGACTGTGGGAAAGATTTGTCAGGAAACACAAATTGTAGTCATTCTGGAAGGTTTTCTTGCTCGAGGACAATCACCTCACTCTTACCGATTGCTCATGTGGGAATGTCTTCCTATTCTGCGTTTCAAAAGGTGTCCTCTGATTTCTTGTCTGGTTTAATCGAAGACCATGTGTTAGATTCACTTGATCTCTTCATTGAAGAGAAAGCATCTGGACGGGACAGCGTAAATTTTCTTAGTTTAATTGGGTTGCCATCATTTGAAGAGGATGCTTTTCCTGGCTCTTTGAGGCATCCTAACATAGCTCCAGTCCTTGCTATTTTTAAAACAACTGATCATGTTAATGTGGTGCTTCCAAAGACTCCATATAACTTGGAAAGTATTCTTCATTTTAACCCCAATGCCTTAAAGTCTGATTGGAATAGAAGATTTCTTATATATCAACTACTCTCAGCCTTATCGTATGTACATGGTTTAGGGGTTTCTCATGGTAACATACGCCCATCCAATATCATGTTGACTGATTCGTTATGGTGTTTGCTCAGATTATGGAGTGATCCTGTATTGGAATCTAATTTAACTTTGCAGGAGAATGAAAGCGCTAATTCTGAACCTGCAAGAATTGGTTGTTGTAATGTTGGTTGTCATTCTTATGGCCTTTATGCTGATCTAAAGCTTTCTCCAACAATAGATTGGCATGCTTGCTTTCAGCAGTGGTGGAGAGGAGAAATAAGTAATTTTGAGTATTTACTCATCTTAAACAGATTATCAGGAAGAAGATGGGGGGACCATACATTTCATCCAGTAATGCCTTGGGTAATTGATTTTAGCTCAAAACCTGATGATAATTGTGATGTTGGGTGGCGAGACTTGAGCAAGAGTAAATGGCGCTTGGCAAAAGGCGATGAACAATTGGATTTCACATATTCAACGTCTGAAATCCCTCATCATGTTTCAGATGAATGTCTGTCTGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGACTGCCTTTGAGTGTTCTCAGAATGGCTGTTCGCTCCGTGTATGAACCTAATGAGTATCCTTCCACAATGCAGAGGCTCTATCAATGGACTCCTGATGAATGCATTCCAGAGTTTTACTGTGATGCTCAAATTTTTAAGTCAATACATGATGGTATGGCTGATTTGGCTGTACCCTCTTGGGCAGAGAGTCCTGAGGATTTCATTAAATTGCATTTTGATGCATTAGAAAGTGATAGGGTGTCATTTCAACTCCATCATTGGATAGATATAACCTTTGGTTATAAGATGTCTGGCCAGGAAGCTATCGCTGCTAAGAATGTTATGCTTCCTCTATCAGAACCCTCGATGCCAAGATCAACAGGACGTCGTCAGCTTTTTACACAACGACACCCCATGCGTCATGCCACTACCAAAACAAAGCGTCATGGTTCCAGAAAATATGCCAAAGTTTCGAGTCAGGCATATGAAATGCAGGGAGAGACATCTCTTCTATCTGGAACTGCTTATCTACAAGAACTAGAGCAAGCATCTAAATTTTCTGAACATGCTAGGCATTTGAATGCCTGTTACCATTATCCCTCAAATCAAATGACGGGGAAGAACATCACATCTTTGGGAGATTCATCAACCGAGACATTTAGTGAAAATATAAGCAAACTATCTTTGATTGACAGAAATTACCGGGTGCCGTGTAAAATGAATCTAATTTCTTTTCTTCAACATATCAAAGAGGAAGATGAAGGCTCCTCAGGATATCCAGACTTGCTACTCTGGAAGCAGAAATTATCTTCTTCAAGACTTTGCTCTGAAGATGTTGCTAGGGACATATTTTCTATTGGTTGTCTCTTGGCTGAACTTCATCTTTCCAGGCCACTCTTTGATCCAATCTCATTGTCAATATACTTGGAAGAGGGAACCTTTCCAGGATTTCTGCAGGATCTACCTCCTAATATTAGATTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCATCTACCAAAATTCTTCTGGAATCACCTTATTTTCCAAAGACTGTCAAGTCCTCGTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAACAGGAAACTCGTCTTCGTTATGCTGCAAATTTTGCAAAGCACGGAGCTCTCAGGGAAATGGGTGCATTTGCAACTGAAATGTGCGCTACTTATTGCTTACCACTTATAGTGAATGCTGTGAGTGATATTGAAGCTGAATGGGCATATATGCTTCTGAAGGAATTTATGAAATGCTTAAGAGTGCAAGCAGTGAAAACATTAATCCTGCCAACAATACAGAAAATTTTACAGACCACAGGTTATTTACGTTTAAAGGTTGCACTTCTACAAGATTCATTTGTAAGGGAAATATGGAATCAAGTTGGTAAACAAGCATACCTCGAAACTATTCATCCATTGGTCTTGTCAAACTTGTACATTTCTCCAGATAAAAGTTCAGGTGCCTCTGCTTCAGTGCTTCTAATCAGTTCTAGCGAGGAGCTTGGAGTACCTATTACCATCCATCAGACTATCCTTCCTCTTGTTCACTGCTTCGGGAAAGGACTATGTGCGGATGGCATTGATGTGCTGGTCAGAATTGGTGGCATTTTTGGGGAATTGTTTATTGTCAAACAGATGGTACCTTTACTAAAAAATGTCGTTCGTTCATTCATTGATGTGTCATGCATGAATAAGCCTGATCCTGTCCAGAGTTGGACTGCTTTGGCACTTATTGATTGCCTGATGACTTTAGATGGACTTATAGCTTTCTTGACAGAAGAGGTCATTGTAAAGGAGCTTCTTGAAGACCTAAGTTGCATACACATTGGGGTTCTTATGCAGAAACATATGGACATTGCAGTGCTTCAGATTGCTGCTTCTACTCTTTTTGGAATTTGTCAGCGGATTGGAGCAGATTTGACAGCGTTGCACATTCTTCCAAAACTTAAAGAACTATTTGATGAGCTGGCTTTCTCCCAGGAACTTTCTAAAGGTTCAACTACTGTTGGCAAAAACTTGAAGGTTGGCAAAATAAAAATTGGAGGGGACTTGCATATTGAAAGTCGTATGGATCTAGTGTTGGTACTCTATCCTTCCTTTGCATCTCTTCTTGGGATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTGATTCTTGAACAACATCTTCTACGTCATCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAATGGTTCAGAAATTATTCTTGCTAGAAGACCTGTAATATCCCAAGGATTTACATCTGAATACAATCCTGCAAAGCTGTTGCTTAATGGAGTTGGATGGTCAATTCCACAATCCCAAGGAAGTCGAAGTGCCAAAAATTTGATTCCTCAAAGACGACCATTTAAAGTTCATCAAAGTCCAGTAGTAGTGCGTGAAGGAATGTCATACCAAATGAACCATGAACCCTGGTTTTGGTTCCCCAGTCCAGCCACCATCTGGGATGGGCCTGAATTTCTTGGGAGGGTGGGGGTTCAGAAAGATGATCTTCCATGGAAGATCAGAGCATCTGTTATATACTCTATACGTGCACATCATGGAGCAGTGAGGTCTCTGGCTGTTAACCAAGATGAATGTACTGTTTTTACTGCAGGAATTGGCCAAGGATACAAGGGAACTGTTCAGAAATGGGAATTGAGCCGAACTAACTGTTTGTCCGGCGGCTATCATGGCCATGAGGAGGTTGTGAATGATATTTGCATCTTATCCTCAAGTGGAAGAATGGCATCTTGTGATGGAACAATTCACATTTGGAATAGCCAAACAGGGAAGCAAATATTGGTATTTGCTGAGTCGCAAACAGAATCTAGCCATCCTACAAACCATCCATCCTCTGCATCAAAGATTAGCAGTGAGCAGGCTAACGTGCTAAATTTGAATACACTAGCAAATGGAATATTGTCTAGTGCTTTCGATTCAAGTCTTTATACTTGTATGCATCAATTATACTCCACTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTGAGGTTTATTGATGTTGCTCGAGGCCAAAAGCTTCATATCTGGAGAGGCGAATCTACTGAATCTAGTTTTCCTTCACTTATTTCTGCCATCTGCTCCACCGGCTCTGACAAGATGCAAGCAGGTGGAATTTCCTCTTTGCCATCTTTTATTGCAGCTGGACTAAGCTCTGGTCACTGTAAATTATTTGATGCTAAGAGTGGAAATGTTATTACCACTTGGCGAGCTCATGATGGATATGTGACAAAGTTGGCAGCACCTGAGGAACATCTGCTCGTTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTAAGAATGAATTTGCCATTGCAGCCCGTTATTTTCAGAGGTCATTCAGATGGTATATCCAGTTTCTCCATTTGGGGCCATGATGTTATTTCAATTTCCCGGAGTAGGATTGGGCTTCTCTCCTTGTCTAAATCTGCTAATGAAACAGATGGGCAGCACCACATTATCCCCCAGAGACTCTACGTTTCTGATAACGGTCAGAGAAGCTTGTCAGCGTTATCAAGTATTAGTATACTTCCATTCTCTCGATTGTTTCTCATTGGAACCGAAGATGGTTATCTGAGAATCTGTTGTTAA 4983 0.4066 MEEESECFECLQLRIKSDFSEQVFFNYAISNSAFPFGSSAIVNISGTTDGEASGGQFILQYMPSRDKNCFINYVNEYSLDSGEITTRSGDPDIGGSKDNNVFKGRITSSDDSDCGKDLSGNTNCSHSGRFSCSRTITSLLPIAHVGMSSYSAFQKVSSDFLSGLIEDHVLDSLDLFIEEKASGRDSVNFLSLIGLPSFEEDAFPGSLRHPNIAPVLAIFKTTDHVNVVLPKTPYNLESILHFNPNALKSDWNRRFLIYQLLSALSYVHGLGVSHGNIRPSNIMLTDSLWCLLRLWSDPVLESNLTLQENESANSEPARIGCCNVGCHSYGLYADLKLSPTIDWHACFQQWWRGEISNFEYLLILNRLSGRRWGDHTFHPVMPWVIDFSSKPDDNCDVGWRDLSKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFKSIHDGMADLAVPSWAESPEDFIKLHFDALESDRVSFQLHHWIDITFGYKMSGQEAIAAKNVMLPLSEPSMPRSTGRRQLFTQRHPMRHATTKTKRHGSRKYAKVSSQAYEMQGETSLLSGTAYLQELEQASKFSEHARHLNACYHYPSNQMTGKNITSLGDSSTETFSENISKLSLIDRNYRVPCKMNLISFLQHIKEEDEGSSGYPDLLLWKQKLSSSRLCSEDVARDIFSIGCLLAELHLSRPLFDPISLSIYLEEGTFPGFLQDLPPNIRLLVEACIQKDWTRRPSTKILLESPYFPKTVKSSYLFLAPLQLVAKQETRLRYAANFAKHGALREMGAFATEMCATYCLPLIVNAVSDIEAEWAYMLLKEFMKCLRVQAVKTLILPTIQKILQTTGYLRLKVALLQDSFVREIWNQVGKQAYLETIHPLVLSNLYISPDKSSGASASVLLISSSEELGVPITIHQTILPLVHCFGKGLCADGIDVLVRIGGIFGELFIVKQMVPLLKNVVRSFIDVSCMNKPDPVQSWTALALIDCLMTLDGLIAFLTEEVIVKELLEDLSCIHIGVLMQKHMDIAVLQIAASTLFGICQRIGADLTALHILPKLKELFDELAFSQELSKGSTTVGKNLKVGKIKIGGDLHIESRMDLVLVLYPSFASLLGIEKLRQCCATWLILEQHLLRHHNWKWEYAGESSKNGSEIILARRPVISQGFTSEYNPAKLLLNGVGWSIPQSQGSRSAKNLIPQRRPFKVHQSPVVVREGMSYQMNHEPWFWFPSPATIWDGPEFLGRVGVQKDDLPWKIRASVIYSIRAHHGAVRSLAVNQDECTVFTAGIGQGYKGTVQKWELSRTNCLSGGYHGHEEVVNDICILSSSGRMASCDGTIHIWNSQTGKQILVFAESQTESSHPTNHPSSASKISSEQANVLNLNTLANGILSSAFDSSLYTCMHQLYSTETLVVGTGNGSLRFIDVARGQKLHIWRGESTESSFPSLISAICSTGSDKMQAGGISSLPSFIAAGLSSGHCKLFDAKSGNVITTWRAHDGYVTKLAAPEEHLLVSSSLDRTLRVWDLRMNLPLQPVIFRGHSDGISSFSIWGHDVISISRSRIGLLSLSKSANETDGQHHIIPQRLYVSDNGQRSLSALSSISILPFSRLFLIGTEDGYLRICC 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02569 1660 Pfam Beige/BEACH domain 348 561 IPR000409 -
Phco6g02569 1660 Gene3D Transferase(Phosphotransferase) domain 1 703 799 - -
Phco6g02569 1660 SMART Beach_2 347 579 IPR000409 -
Phco6g02569 1660 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1531 1564 - -
Phco6g02569 1660 SUPERFAMILY Protein kinase-like (PK-like) 206 292 IPR011009 -
Phco6g02569 1660 ProSiteProfiles Protein kinase domain profile. 139 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02569 1660 Gene3D BEACH domain 339 589 IPR036372 -
Phco6g02569 1660 Pfam Protein kinase domain 205 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02569 1660 PANTHER GH12955P 3 1660 - -
Phco6g02569 1660 ProSiteProfiles Trp-Asp (WD) repeats profile. 1531 1564 IPR001680 GO:0005515
Phco6g02569 1660 ProSitePatterns Trp-Asp (WD) repeats signature. 1549 1563 IPR019775 -
Phco6g02569 1660 Gene3D Transferase(Phosphotransferase) domain 1 200 302 - -
Phco6g02569 1660 SUPERFAMILY BEACH domain 327 579 IPR036372 -
Phco6g02569 1660 SUPERFAMILY Protein kinase-like (PK-like) 717 820 IPR011009 -
Phco6g02569 1660 Pfam WD domain, G-beta repeat 1526 1562 IPR001680 GO:0005515
Phco6g02569 1660 Pfam WD domain, G-beta repeat 1350 1380 IPR001680 GO:0005515
Phco6g02569 1660 SUPERFAMILY WD40 repeat-like 1299 1658 IPR036322 GO:0005515
Phco6g02569 1660 CDD Beach 348 579 IPR000409 -
Phco6g02569 1660 Gene3D - 1495 1660 IPR015943 GO:0005515
Phco6g02569 1660 ProSiteProfiles BEACH domain profile. 335 604 IPR000409 -
Phco6g02569 1660 Gene3D - 1274 1494 IPR015943 GO:0005515
Phco6g02569 1660 SMART WD40_4 1296 1339 IPR001680 GO:0005515
Phco6g02569 1660 SMART WD40_4 1411 1462 IPR001680 GO:0005515
Phco6g02569 1660 SMART WD40_4 1343 1380 IPR001680 GO:0005515
Phco6g02569 1660 SMART WD40_4 1625 1660 IPR001680 GO:0005515
Phco6g02569 1660 SMART WD40_4 1524 1562 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02569 Phco-Chr6 47260358 47274269 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDKL-Cr Phco6g02569 Beach 2.9e-44 No_clan