Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02565 ATGCAGCTTATTCACTCCGACGAACCCGCGTCTGAGCGGTGCGACTCGCCAGAGAAACCCGAGGATTCTAACTCTACCTCCGATTCTCTCGACTCCGTAACCGACGACAGAGCGGCTCTTGACGTCACCGGGAAGAGCCTCGAGTTTCCGGAAGCGGAGAACGCCGAGCACTCCGCTGAGAGCCTCTATGTGTACAAGAACATTTACAGTCTTATTCCGAAGTCGGTTTCGCGCCTAGAGCGGTTGCGAACGCTGAAGTTCTTCGGAAATGAGATTAACCTGTTCGCGCCCGAGGTTGGGAACTTGACGGCGTTGGAGTGCTTGCAGATGAAAATTTCCTCGCCGGGGATCGGAGGCTTGCCGTTGCACACGCTCCAGGGTTTGAAGGAACTCGAACTTTCCAAAGGACCTCCCAGACCTTCTGCTTTTCCGATTTTGTCAGAGATTTCTGGTCTCCGGTGCTTGACCAAGCTTTCCATTTGTCATTTCTCCATAAGATACCTTCCTCCGGAAATTGGATGCCTGAAAAAACTGGAGTATCTTGATCTTTCGTTTAATAAAATGAAGACGTTGCCAGTGGAGATAAGTTACTTGAGTGGCTTGATATCCATGAAAGTTGCGAATAATAAGTTGATGGAACTGCCGTCGACTATGTCTTCTCTGTTAAGACTGGAGAGTTTGGACCTGTCTAATAATAAGTTGACTTCGTTAGGGTCCCTGGAACTTGCCTCCATGCATAGACTTAAGAAGTTAAATCTTCAGTACAACAAGCTGCTCAGGACTTTTCAAATTCCTTCATGGATATGTTGTAATATGGAGGGAAATGATGAAGCTAGATGCAAAGATGATTGTAGCAGCTCTTCTGTTGAAATGGATCTCAATGAAAGCAACTTTCAGGAAAATGACGAAACCATTTCTGAGGGTCCTAACCATATCCCATCAAGCATGCTAACAAGCTCCTCATCTAGCAGCAGATGTTTTGTGTCCCGGAAGTCAGGTAAGCGGTGGAAAAGACGGTATTATTTACAGCAGAAAGCTCGTCAAGAACGCTTGAACAACAGTAGGAAGTGGAAGGCTGTAGATCATGACCAGTTGTCGAGCAAGAAGATTCACAGAATTTCTGAACCAGGAAATCGTGATAGTCTTGATTCTGAAACTTGTGCAGAAATTGTATCAGAGAATGGGAACCTGGATGATAATAAAAGAATATTTTCTGAACAAGAAATAAATGACAGTGAAGTTGATAATCTTAACAATGGTGATGTAATTATTGAGAAGCACTTTTCTGGGGAAGATTGCTGCACTACTGAAAGCAAAGATGAAAAGGATGCATGCTTGTGCTCCATAGTGAACAGGCAAAGTGAACAGGATGAAGTATCTTGTTTGGAACTTTTAGAGTGTGTTTCTAAATCAAAGAGACATTTAGACCGGGATCTTGATAATCCTAAACCGTGCAAGTCTAGAAAATCTATCAGTGCTAGTTCATCATTGTCTTGCAAGTACAGCAAGATCTCATTTTGTGGCATTGAAGACCATCTATCAGATGGCTTTTATGATGCAGGACGAGATCGGGCATTTATGCCTCTAGAGAGTTATGAGCAAAATCAGTGTCTTGCTTCTCGTGAAGTCATCCTTCTAGACAGAAAAAGGGATGAAGAGTTGGATGCTGTTATGCTAGCTGCACAGGCATTGGTCTATAATTTGAAGCAGTTAAATGGTTTAAACAGACATGGGAGCCAGGATGCGGTTGATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAGAGGTGCTACTGTAGAACGGACACGGAAATCTGTGTCTGGTTCAAACTATAATAAACCTTTTTTCTGTACATGCTCGGCTGGAAGCAGCACCAGTATAAGGGCTTCCTCTGAACCAGTTGTAAACACCATAGAAGATATCACTCTTTCTAAGATATCGGAAAAATATCTCGACTCTATTAAAAAAATGCAAAATTCAATCATAGTTCCAATTGGCTCTGTGCAGTATGGTGTATGCAGACATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGATCCATCAGTTCCTTGTGAGCTTGTCAGGGGTTACCTAGATTTTTCACCACATGCCTGGAATATCGTTCTGATTAAGAGGGGTGCCAAGTGGGTTCGAATGCTGATTGATGCTTGTCGACCTCTTGATATAAGAGAAGAGAAAGATACTGAATACTTTTGCAGGTATATACCTCTTAATCGAACCACAATCCCTCTTTCTTCAAGAGGAATTCCAGGTTCTGATTATTCTTTTCCATCACTTACTACATGTGATGAACTTGAGACAAAGGCTTCAACTACTTTAATTAAATGCAAAATGGGATCAGTTGAGGCAGCAGCAAAGGTGCGTACTTTGGAAGATCAGGGGAGTTCGGCTGACAAAATTAAAAACTTTGAGTATAATTGTCTGGGAGAAATAAGAATTCTTGGTGCTTTAAAACACCCATGCATAGTAGAAATGTATGGACACCAAATGTCATGTCAATGGTCTGTCTCAGCCGATGGTAATCCTGAACACCGAGTGTTTAGATCTGCCATTTTTATGGAGTATGTGGAAGGGGGCTCTTTAAAAAACTATCTGGAGAAGCTGTCAGACTCTGGGAAAATGTATGTTCCTGTGGAGTTGGCTTTGCATGTTGCCAAAGATGTCTCATGTGCTTTGTCGGAGCTGCACTCGAGGCACATAATTCATCGTGACATAAAAAGTGAAAACATTCTGCTTGATTTGAATAGGAAGAGAGACAATGGAGCTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCGCTAAGATCAACTTTACATGCATGTTGTATTGCTCATGTGGGAACACCTCCTCCCTGTGTATGTGTTGGAACGCCTAGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATAAAAACAAATCTTATGGATTGGAAGCTGACATTTGGTCGTTTGGATGTTTACTTTTGGAGATGCTTACTTTGCAAATTCCATATTCTGGGCTTTCTGATTCACACTTCCATGATAGTCTGCAGATGGGTAAACGACCACAATTAACTGATGAGCTGGAAGCATTGAGTTCAATGAATGAACCCTCAATGATTCCATCCGGTGAAGAGCTAGAAAAATCAGATGTTGAGGTGGACATGTTGAAATTCCTTGTTGATTTGTTTCACAAGTGCGTAGAAGAAAATCCTAACAAGCGTCCTACAGCTGAGGAAATCCATAAAATGCTGCTTGCACAGACACACAAAGATCAATTTCAAGTTTAA 3333 0.4236 MQLIHSDEPASERCDSPEKPEDSNSTSDSLDSVTDDRAALDVTGKSLEFPEAENAEHSAESLYVYKNIYSLIPKSVSRLERLRTLKFFGNEINLFAPEVGNLTALECLQMKISSPGIGGLPLHTLQGLKELELSKGPPRPSAFPILSEISGLRCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKMKTLPVEISYLSGLISMKVANNKLMELPSTMSSLLRLESLDLSNNKLTSLGSLELASMHRLKKLNLQYNKLLRTFQIPSWICCNMEGNDEARCKDDCSSSSVEMDLNESNFQENDETISEGPNHIPSSMLTSSSSSSRCFVSRKSGKRWKRRYYLQQKARQERLNNSRKWKAVDHDQLSSKKIHRISEPGNRDSLDSETCAEIVSENGNLDDNKRIFSEQEINDSEVDNLNNGDVIIEKHFSGEDCCTTESKDEKDACLCSIVNRQSEQDEVSCLELLECVSKSKRHLDRDLDNPKPCKSRKSISASSSLSCKYSKISFCGIEDHLSDGFYDAGRDRAFMPLESYEQNQCLASREVILLDRKRDEELDAVMLAAQALVYNLKQLNGLNRHGSQDAVDNLQTASLLALFVSDHFGGSDRGATVERTRKSVSGSNYNKPFFCTCSAGSSTSIRASSEPVVNTIEDITLSKISEKYLDSIKKMQNSIIVPIGSVQYGVCRHRALLFKYLCDHMDPSVPCELVRGYLDFSPHAWNIVLIKRGAKWVRMLIDACRPLDIREEKDTEYFCRYIPLNRTTIPLSSRGIPGSDYSFPSLTTCDELETKASTTLIKCKMGSVEAAAKVRTLEDQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHQMSCQWSVSADGNPEHRVFRSAIFMEYVEGGSLKNYLEKLSDSGKMYVPVELALHVAKDVSCALSELHSRHIIHRDIKSENILLDLNRKRDNGAPTVKLCDFDSAVPLRSTLHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYKNKSYGLEADIWSFGCLLLEMLTLQIPYSGLSDSHFHDSLQMGKRPQLTDELEALSSMNEPSMIPSGEELEKSDVEVDMLKFLVDLFHKCVEENPNKRPTAEEIHKMLLAQTHKDQFQV 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02565 1110 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Phco6g02565 1110 Pfam Protein kinase domain 817 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02565 1110 SUPERFAMILY L domain-like 60 266 - -
Phco6g02565 1110 Gene3D Ribonuclease Inhibitor 40 288 IPR032675 -
Phco6g02565 1110 SUPERFAMILY Cysteine proteinases 679 737 IPR038765 -
Phco6g02565 1110 FunFam Leucine-rich repeat protein kinase family protein 48 290 - -
Phco6g02565 1110 Pfam Ethylene-responsive protein kinase Le-CTR1 653 734 - -
Phco6g02565 1110 SMART LRR_sd22_2 221 242 - -
Phco6g02565 1110 SMART LRR_sd22_2 175 200 - -
Phco6g02565 1110 MobiDBLite consensus disorder prediction 8 25 - -
Phco6g02565 1110 SMART LRR_bac_2 198 217 - -
Phco6g02565 1110 SMART LRR_bac_2 221 240 - -
Phco6g02565 1110 SMART LRR_bac_2 175 194 - -
Phco6g02565 1110 SMART serkin_6 778 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02565 1110 FunFam Leucine-rich repeat protein kinase family protein 824 1105 - -
Phco6g02565 1110 PRINTS Leucine-rich repeat signature 221 234 - -
Phco6g02565 1110 PRINTS Leucine-rich repeat signature 178 191 - -
Phco6g02565 1110 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Phco6g02565 1110 Gene3D Transferase(Phosphotransferase) domain 1 778 1109 - -
Phco6g02565 1110 MobiDBLite consensus disorder prediction 1 37 - -
Phco6g02565 1110 ProSiteProfiles Protein kinase domain profile. 786 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02565 1110 SUPERFAMILY Protein kinase-like (PK-like) 793 1100 IPR011009 -
Phco6g02565 1110 SMART LRR_typ_2 245 271 IPR003591 -
Phco6g02565 1110 SMART LRR_typ_2 221 244 IPR003591 -
Phco6g02565 1110 SMART LRR_typ_2 79 102 IPR003591 -
Phco6g02565 1110 SMART LRR_typ_2 175 198 IPR003591 -
Phco6g02565 1110 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 105 1105 - -
Phco6g02565 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 919 931 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02565 Phco-Chr6 47229599 47238166 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Phco6g02565 Pkinase 2.6e-41 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02565 6 47229599 47238166 Phco6g02565 6 47229599 47238166 ECH