Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02560 ATGGAAGATAATGGCTTGGCGCCGTTGTTCTATATTGGACACCACAAGTTGAAGCTTCTCACGTCTCCTCTTCTGCTCATGCTCTTCCTTCTCTCTCCATTTGCTTTGCCCCTCAGCGAAGAAGGACAGGCATTAATGGCGATGAAGGCTACTTTTAGCAATATGCCAGACGTGCTTCTTGACTGGGATGACGTTCACAATGACGACTTTTGCTCTTGGCGTGGAGTTTTCTGCGATAATGGCAGCCTTACTGTGATTTCTCTGAACTTGTCCAGCTTGAACCTCGGTGGGGAGATATCCCCAGCCATTGGTGACTTGAGAAATTTGCAGTCAATAGACTTGCAAGGGAATAAATTAACGGGGCAAATCCCAGATGAAATTGGAAACTGTGCAGCACTTTTTCATTTGGATTTGTCTGATAATCAGCTTTATGGTGATATACCTTTCTCCCTATCAAAGCTAAAGCAACTTGAGTTTTTGAATTTAAAGAGTAATCAGATAACTGGTCCTATCCCTTCAACACTAACCCAAATTCCAAATCTGAAGACTCTTGATCTTGCTCGAAATAGGCTCACTGGAGAGATCCCAAGATTACTCTATTGGAATGAAGTCTTGCAGTACCTGGGATTACGAGGGAACATGTTGAGTGGTAGTCTGTCCCCTGATATATGTCAATTAACTGGATTGTGGTATTTTGACGTGAGAGGCAATAGTTTGACTGGTACTATACCTGACAGCATAGGGAACTGTACTAGTTTTGAAATCTTAGACATCTCATATAATCAGATTACTGGAGAGATTCCATATAATATTGGGTTTCTGCAAGTTGCTACTTTGTCACTTCAAGGAAATAGATTAAGTGGGAAGATTCCAGAAGTGATTGGTTTGATGCAAGCACTTGCAATATTGGATTTGAGTGAGAATGAGTTAGTGGGATCAATTCCCCCAATACTTGGGAATCTGACCTTCACTGGAAAGCTGTACCTTCATGGAAACATGCTTACTGGCCCGATACCTCCTGAACTCGGGAATATGTCCAAACTGAGCTACTTGCAATTGAATGACAACCACCTAATTGGTAAAATTCCAGATGAGTTTGGGAAGCTGGAACATCTTTTTGAATTGAATCTTGCCAATAATCATTTTGATGGAACTATTCCACATAACATAAGCTCCTGCACAGCCTTAAATCAGTTTAATGTGCATGGCAATCAGTTAAGTGGTTCCATTCCATTGAGCTTCCGCAAGCTTGATAGCTTGACATACTTAAACCTCTCTGCAAACAACTTCAAGGGGAATATACCTGTCGAGTTGGGGCATATTATTAATCTAGATACACTGGATCTATCTAGCAATAATTTTTCAGGACATGTTCCAGCATCTGTTGGTTATCTGGAACATCTCTTGAGCCTCAACTTGAGTCACAACCACCTTGGAGGTTCCTTGCCAGCTGAATTTGGGAATCTCAGAAGCATTCAAATTCTTGATATGTCATTCAACAATCTCTCTGGTAGCATTCCTCCGGAAATTGGACAGCTGCAGAACCTTATGTCTTTGATTATGAACAACAATGATCTGCGTGGGAAGATTCCTGATCAGCTGACCAATTGTTTTAGTCTTACACTATTAAATTTGTCCTATAATAATCTTTCTGGAGTAATTCCTTCAATGAAGAACTTTTCAAGGTTTTCAGCTGACAGCTTCTTTGGAAATTCATTATTATGTGGAGATTGGTTGGGATCAATATGTCGTCCCTACATTCCGAAATCAAGAGAGATTTTCTCCAGAGTTGCTGTAGTATGTCTCACGCTTGGAATTATGATATTGTTAGCCATGGTAATTGTAGCCTTCTACAGATCCAGCCAATCTAAGCAATTGATGAAAGGATCCAGCAGAACTGGGCAAGGTCCTCCAAGACTAGTTATTCTTCACATGGATATGGCTATCCACACCTTGGATGATATAATGAGAAGCACTGAGAATCTCAATGAGAAATATATCATAGGTTATGGTGCCTCTAGTACTGTATACAAATGTGTTTTGAAGAATTCCCGACCAATTGCAATTAAGCGACTCTATAACCAACAACAACACAATTTAAGGGAGTTTGAAACCGAACTTGAGACAGTTGGTAGCATTAGACACAGAAACCTTGTCACCTTGCATGGATATGCACTTACTCCCGATGGAAATCTTCTTTTCTATGACTATATGGCGAATGGCTCATTGTGGGATCTTCTACATGGTCCCTCGAAGGTAAAACTTGATTGGGAAACACGTCTGAGGATTGCTGTTGGAGCAGCCGAAGGACTTGCTTATCTCCATCATGACTGCAACCCAAGAATAGTTCATAGGGACATAAAATCTTCGAATATTTTGCTGGATGAGAATTTCGAGGCTCATCTTTCTGATTTTGGTACTGCAAAATGCATCTCGACCGCAAGAACTCATGCATCGACTTATGTCCTTGGAACTATAGGCTATATTGACCCTGAGTATGCCCGAACATCTAGGCTGAATGAAAAATCGGATGTGTATAGCTTTGGCATAGTTCTTTTGGAGTTACTAACTGGAAAAAAGGCAGTGGACAATGATTCTAATTTGCATCAATTGATATTGGCCAAGGCAGATAACAACACTGTAATGGAGGCTGTGGATGCAGAGGTGTCTATAACATGCATTGATCTAGCTCATGTTAAGAAGACCTTTCAGCTTGCTTTGCTTTGCACGAAAAAGAACCCTTCTGAGAGGCCTACCATGCATGAAGTAGCCAGGGTTCTGGTATCATTACTTCCTTCACCTCCAAGTAAGATCCTTGCTCCACCTGCAAAGAAGTTTGATTATGCGCATTTTGTTATCGAGAAGGGACAGCCTCGAAAAGTGGAAGGACAACCTCACCAAGATAACTCAACCAATGCTCAATGGTTTGTTCGCTTTGGGGATGTTATATCGAAGAGCACTTGA 2964 0.4113 MEDNGLAPLFYIGHHKLKLLTSPLLLMLFLLSPFALPLSEEGQALMAMKATFSNMPDVLLDWDDVHNDDFCSWRGVFCDNGSLTVISLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCAALFHLDLSDNQLYGDIPFSLSKLKQLEFLNLKSNQITGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGSLSPDICQLTGLWYFDVRGNSLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNRLSGKIPEVIGLMQALAILDLSENELVGSIPPILGNLTFTGKLYLHGNMLTGPIPPELGNMSKLSYLQLNDNHLIGKIPDEFGKLEHLFELNLANNHFDGTIPHNISSCTALNQFNVHGNQLSGSIPLSFRKLDSLTYLNLSANNFKGNIPVELGHIINLDTLDLSSNNFSGHVPASVGYLEHLLSLNLSHNHLGGSLPAEFGNLRSIQILDMSFNNLSGSIPPEIGQLQNLMSLIMNNNDLRGKIPDQLTNCFSLTLLNLSYNNLSGVIPSMKNFSRFSADSFFGNSLLCGDWLGSICRPYIPKSREIFSRVAVVCLTLGIMILLAMVIVAFYRSSQSKQLMKGSSRTGQGPPRLVILHMDMAIHTLDDIMRSTENLNEKYIIGYGASSTVYKCVLKNSRPIAIKRLYNQQQHNLREFETELETVGSIRHRNLVTLHGYALTPDGNLLFYDYMANGSLWDLLHGPSKVKLDWETRLRIAVGAAEGLAYLHHDCNPRIVHRDIKSSNILLDENFEAHLSDFGTAKCISTARTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHQLILAKADNNTVMEAVDAEVSITCIDLAHVKKTFQLALLCTKKNPSERPTMHEVARVLVSLLPSPPSKILAPPAKKFDYAHFVIEKGQPRKVEGQPHQDNSTNAQWFVRFGDVISKST 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02560 987 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 203 312 - -
Phco6g02560 987 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 313 586 - -
Phco6g02560 987 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Phco6g02560 987 Gene3D Transferase(Phosphotransferase) domain 1 738 935 - -
Phco6g02560 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Phco6g02560 987 Pfam Leucine Rich repeat 249 266 IPR001611 GO:0005515
Phco6g02560 987 SUPERFAMILY L domain-like 40 335 - -
Phco6g02560 987 ProSiteProfiles Protein kinase domain profile. 662 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02560 987 Gene3D Ribonuclease Inhibitor 203 314 IPR032675 -
Phco6g02560 987 Pfam Leucine Rich Repeat 108 130 IPR001611 GO:0005515
Phco6g02560 987 SMART serkin_6 662 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02560 987 Gene3D Phosphorylase Kinase; domain 1 628 737 - -
Phco6g02560 987 SUPERFAMILY RNI-like 220 556 - -
Phco6g02560 987 ProSiteProfiles Leucine-rich repeat profile. 180 202 IPR001611 GO:0005515
Phco6g02560 987 Gene3D Ribonuclease Inhibitor 38 202 IPR032675 -
Phco6g02560 987 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 476 561 - -
Phco6g02560 987 SUPERFAMILY Protein kinase-like (PK-like) 640 927 IPR011009 -
Phco6g02560 987 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 38 202 - -
Phco6g02560 987 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 633 737 - -
Phco6g02560 987 Pfam Protein kinase domain 664 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02560 987 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 738 937 - -
Phco6g02560 987 Gene3D Ribonuclease Inhibitor 315 586 IPR032675 -
Phco6g02560 987 SMART LRR_typ_2 345 368 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 489 513 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 465 488 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 417 441 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 369 393 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 226 250 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 178 202 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 297 321 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 154 177 IPR003591 -
Phco6g02560 987 SMART LRR_typ_2 106 130 IPR003591 -
Phco6g02560 987 Pfam Leucine rich repeat 443 502 IPR001611 GO:0005515
Phco6g02560 987 Pfam Leucine rich repeat 136 191 IPR001611 GO:0005515
Phco6g02560 987 Pfam Leucine rich repeat N-terminal domain 39 79 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02560 Phco-Chr6 47151839 47158893 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Phco6g02560 Pkinase 1.8e-44 CL0016