Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02548 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTGATCCAATTTTCTAATGGTCTCCAACCACAACATAAAATCTCTAAAGATCTGGTCCTGGATGATCACAATATCGATAATTCTCCCCTTGTCGCTTATTCAGATAAAAAATTGCCTAGCCACCCCAACAAACTTTTTTATGCGCCTAAAACCAGTCACGCTAATTCTACCCAAGAAGAATCTGCAAAAAAGATGGTTCACAGAGAGATTGAGAGGAAAAGGAGGCAAGAAATGGCAACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCCCTTCATCAAGGGAAAGCGTTCCATATCTGATCAAATGAGCGAGGCAGTGAATTACATAAACCACCTGCAGAAGAATATTAAAGAGTTGAGTGACAAGAGGGATAAGCTGAAGAAACTTCCCATAAACTCCACCCTCGAAAGCCGTGAGAACAAGCATGAATCTAGTGGTTTCACTGTCCACCAAAATAGTAGTGGAGCTGTGGGGATTGAAATCAGTGAATTCAAAGGGGTTTCACTTTCTAAATTGCTGGAACTAGTGTTAGAAGAGGGACTTGAAGTTGTTTGCTGTCTTTCAACTAAAGTCAATGGCAGATTATTCCACAGTTTGCAGTGTGAGGTTGAAAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGAAAATTCTCCAATGTAATTGCATCATTTAGATTTTCTGAATAA 726 0.4063 MFPLQRGNELVIQFSNGLQPQHKISKDLVLDDHNIDNSPLVAYSDKKLPSHPNKLFYAPKTSHANSTQEESAKKMVHREIERKRRQEMATLHASLRSLLPLPFIKGKRSISDQMSEAVNYINHLQKNIKELSDKRDKLKKLPINSTLESRENKHESSGFTVHQNSSGAVGIEISEFKGVSLSKLLELVLEEGLEVVCCLSTKVNGRLFHSLQCEVENSDSVDLSELRRKFSNVIASFRFSE 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02548 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 140 IPR036638 GO:0046983
Phco6g02548 241 CDD bHLH_AtORG2_like 73 149 - -
Phco6g02548 241 SMART finulus 78 130 IPR011598 GO:0046983
Phco6g02548 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 124 IPR011598 GO:0046983
Phco6g02548 241 FunFam Transcription factor bHLH126 64 153 - -
Phco6g02548 241 Coils Coil 114 141 - -
Phco6g02548 241 Pfam Helix-loop-helix DNA-binding domain 73 125 IPR011598 GO:0046983
Phco6g02548 241 Gene3D - 63 156 IPR036638 GO:0046983
Phco6g02548 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 62 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02548 Phco-Chr6 47039139 47040117 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g02548 HLH 1.5e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02548 6 47039139 47040117 Phco6g02548 6 47039139 47040117 ECH