Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02547 ATGAATCCTTTACACCCTAGTGATGAGTTGTACTCTCAGATTACAACTGATAATTACTGTTCCCTACCAATCCAAACAACCACTCTACAAAATCAGATCTTGTGTGATCCTATGATGGATGGTACTGCTCTCATTCCGTGTACAGGTCAAATGGAAACTACCAAGGGCAAGCAGAGAGAAAAGTCACCTGCTTGGAGAAACGAGGATTATAAGATCACCACCATAGATGAAAACAAGAAGTGGATGCATAGAGAGACCGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACTCACTTTAGATCTCTTCTGCCTCTTGAATATATTAAGGGAAAGCGCTCAATTTCTGATCATATGCTTGAGGGTTCAAATTACATCAAACACCTTGAAAACAAAGTGAAACAGTTGGCAGCTAAGAGAGACAGGTTTAAGAAGTTGTCCAATTTGATTCCTGTTGTTTCTGATTGTGGAAGCTTTAGCACTACCCTTCTTCCAATATGTGTCATTGTTCATCCTTTTCTAGGAGGTGTTCAGATTAAGTGTAGTTATAGTTTCAGAAAATATGTCTTTCCCTTGTCAAGAATGATAGATATGGTGCTTAAAGAAGGGCTTGATGTGGTCAACTGTACCTCCACCAAAACAGATGACAGGTTCATACACACTATCCGATTAGAGGTTCCACATATGATGACTGGGACTAATTACACTGAACTGCAAAGGAAGCTTGTCGAAGCAATATCATCATCTTCAAGTTCGGAGGAGATAGTATCTGAACATGAAAAGTGCTGA 792 0.3965 MNPLHPSDELYSQITTDNYCSLPIQTTTLQNQILCDPMMDGTALIPCTGQMETTKGKQREKSPAWRNEDYKITTIDENKKWMHRETEKQRRQEMTRLCTHFRSLLPLEYIKGKRSISDHMLEGSNYIKHLENKVKQLAAKRDRFKKLSNLIPVVSDCGSFSTTLLPICVIVHPFLGGVQIKCSYSFRKYVFPLSRMIDMVLKEGLDVVNCTSTKTDDRFIHTIRLEVPHMMTGTNYTELQRKLVEAISSSSSSEEIVSEHEKC 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02547 263 FunFam Transcription factor bHLH126 70 156 - -
Phco6g02547 263 CDD bHLH_AtORG2_like 79 149 - -
Phco6g02547 263 Coils Coil 127 147 - -
Phco6g02547 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 78 130 IPR011598 GO:0046983
Phco6g02547 263 Pfam Helix-loop-helix DNA-binding domain 80 131 IPR011598 GO:0046983
Phco6g02547 263 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 65 245 - -
Phco6g02547 263 Gene3D - 71 154 IPR036638 GO:0046983
Phco6g02547 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02547 Phco-Chr6 47022906 47024496 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco6g02547 HLH 4.5e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02547 6 47022906 47024496 Phco6g02547 6 47022906 47024496 ECH
Phco5g00588 5 5603000 5604133 Phco6g02547 6 47022906 47024496 PCT