Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02546 ATGAAGTTTAAATGTTTCAGTTGTTTTCTTTGTGAAAAAGAGCAATCCCAGATACAGTATGATTTCATCAAATTACTTCATGTCACGAATGGCAAGGAGAAGAAGAAAAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAACAATTTTCACCAAGATAACAAGATTGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTGGAGATCGCAGTGAAGCGGTTGAAGACCATGACTGCAAAGGCAGAGATGGAGTTTGCAGTGGAAGTGGAAGTACTAGGAAGGGTGAGGCATAAAAATTTGTTAGGGTTGCGTGGATTCTATGCAGGAGGTGATGAAAGGTTGATTGTCTATGACTACATGCCTAATCACAGTTTGCTCAATCATTTGCATGGTCAACTTGCCACCGATTATTTGCTAGATTGGCCTAAAAGAATGAGCATAGCAATTGGAGCAGCTGAAGGCTTGGTGTATTTGCACCATGAGGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTAGACTCTGAATTTGAAGCCAAGGTTGCTGATTTTGGGTTTGCTAAGTTGATACCAGAGGGTGTAAGCCATCTGACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCGCCAGAATATGCCATGTGGGGGAAGGTTTCTGAGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTGAGTTCCAAGAAACCAATTGAGAAACTCTCTGGCGGAGTGAAAAGGGATATAGTTCAGTGGGTTACACCACATTTTCAAAAGGGTAACATCACTCATATTGCTGATTCAAAATTAAAGGGACGATTCGATTTGGAGCAGTTGAAACGTGTAATTACGATAGCTATAAGGTGCACTGATAATAGTCCAGAGAAAAGGCCTAGCATGGTAGAGGTGGTGGAGTGGCTCAAGGGTGGCATGGGGAGGAGAAAAAAAGAGATTCCAAATTTAACTTACACCAATGGAGATGAAGAGATTAGAAGAACACAATCCAAGTTGAAAATACCAAGTGATGATGATGAACTTAAAATAAGATAA 1110 0.4099 MKFKCFSCFLCEKEQSQIQYDFIKLLHVTNGKEKKKRDYPWEIYTLKELLRATNNFHQDNKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLNHLHGQLATDYLLDWPKRMSIAIGAAEGLVYLHHEANPHIIHRDIKASNVLLDSEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIVSSKKPIEKLSGGVKRDIVQWVTPHFQKGNITHIADSKLKGRFDLEQLKRVITIAIRCTDNSPEKRPSMVEVVEWLKGGMGRRKKEIPNLTYTNGDEEIRRTQSKLKIPSDDDELKIR 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02546 369 SMART serkin_6 56 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02546 369 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 6 331 - -
Phco6g02546 369 Gene3D Transferase(Phosphotransferase) domain 1 132 339 - -
Phco6g02546 369 Gene3D Phosphorylase Kinase; domain 1 15 131 - -
Phco6g02546 369 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Phco6g02546 369 Pfam Protein kinase domain 56 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02546 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 28 131 - -
Phco6g02546 369 SUPERFAMILY Protein kinase-like (PK-like) 38 335 IPR011009 -
Phco6g02546 369 ProSiteProfiles Protein kinase domain profile. 56 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02546 369 CDD STKc_IRAK 62 329 - -
Phco6g02546 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Phco6g02546 369 FunFam PTI1-like tyrosine-protein kinase At3g15890 132 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02546 Phco-Chr6 47008193 47011470 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Phco6g02546 Pkinase 1.6e-44 CL0016