Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02538 ATGCAATATAGAGAGAGAAGTGAAAAGGGTGAGAGAGGTGCAGAGAAAGATCAGGAAGGAAGCATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACACAACAAGATCAGTCGCCAAGTCACCTTCTCAAAGCGCAGAAACGGTTTGTTAAAGAAAGCCTTCGAACTATCTGTGCTATGCGACTCTGAAATCGCTCTTATCATCTTCTCCAGTCGTGGCAAGCTTTTTCAGTACAGTACCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCAGCATGTCTCAGACTGGCGACGAAGCTGAACATCAATCGGAGCAGTGCTTATATCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAATCACTCCAGCGAACTCAAAGGAATCTTCTGGGAGAAGAGCTTGAGCCACTTAGCATGAAAGAATTGCATAGCTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTATCACAGAAGCTGGTGTCAAGAATTGACGAACTACACGGAAAGGTGCGCAACCTGGAGCAGATTAACAGACATTTGGAGTCTAAGGAAATAGGAAAATGCACTCAGATTTCTGAAGATTCTACTAATCAGTTTGAAGCTGGAACAGCAGGTTGGTTGCGGCTTCAGCAGGAGCAAAGTAGTTCAAAAGGAAAAGAAGTAGACACGAATAACCAATGGCAGCTCTCAATAAAGTGGCCATATGCTTAA 738 0.4404 MQYRERSEKGERGAEKDQEGSMGRGKVVLERIHNKISRQVTFSKRRNGLLKKAFELSVLCDSEIALIIFSSRGKLFQYSTTDINRIIEKYRQCCFSMSQTGDEAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLSQKLVSRIDELHGKVRNLEQINRHLESKEIGKCTQISEDSTNQFEAGTAGWLRLQQEQSSSKGKEVDTNNQWQLSIKWPYA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02538 245 PRINTS MADS domain signature 24 44 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 PRINTS MADS domain signature 44 59 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 PRINTS MADS domain signature 59 80 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 FunFam MADS-box transcription factor MADS-MC 34 108 - -
Phco6g02538 245 CDD MADS_MEF2_like 23 93 IPR033896 GO:0000977|GO:0045944
Phco6g02538 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 78 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 ProSiteProfiles MADS-box domain profile. 22 82 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 ProSitePatterns MADS-box domain signature. 24 78 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 Coils Coil 172 192 - -
Phco6g02538 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 22 210 - -
Phco6g02538 245 SMART madsneu2 22 81 IPR002100 GO:0003677|GO:0046983
Phco6g02538 245 Pfam K-box region 105 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco6g02538 245 Gene3D - 34 114 IPR036879 GO:0003677|GO:0046983
Phco6g02538 245 MobiDBLite consensus disorder prediction 1 23 - -
Phco6g02538 245 Coils Coil 146 166 - -
Phco6g02538 245 ProSiteProfiles K-box domain profile. 109 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco6g02538 245 SUPERFAMILY SRF-like 23 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02538 Phco-Chr6 46920493 46926085 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco6g02538 K-box 8.5e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02538 6 46920493 46926085 Phco6g02538 6 46920493 46926085 ECH