Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02534 ATGACAAAAATGGACGGAATAAGGCAACACCCTCCTTTCTGTGGTCCAAGAATCATCTACAATGAATGCCACTTTGCTGGAAGTGCGATCCTTTTAGCTAGGGAGATGGTGAGGGGAAAGGTTCAAATGAAGAAAATTGAGGATGCAACAAGCCGTCAAGTGACTTTTTCAAAGCGTAGAAATGGTCTTCTAAAGAAAGCTTATGAGCTATCCGTTCTTTGTGATGCACAAGTAGCTGTCATAGTCTTCGCCCAGAATGGAAGGCTCTATGAGTTCTCAAGTTCCGACATGTCAAAGATTTTGGAACGATACCGTAAATATACCAAAGATGTTCCTGCCAATAAGCTTGGAGACGATTATATCCAGCAACTGAAGTTAGAATCCGCAAGAATGGCAAAGAAGATTGAGCTTCTTGAAATTTCTAAAAGGAATCTGCTGGGAGAAAACGTGAGTTGTTCCTATGATGAACTGAAAGGAATTGAGGATCAGCTGCAGAGAAGTTTGCTAAGAGTCAGAGAAAGAAAGGCTCAACTATATACGGAGCAGATTGATCAACTACGATCCCAGGAGAGTAACTTGCTCCAAGAGAATGCCAAATTAACTGAAATGTGGCAGGGGGCGGAAAAGACATCCCAGCAGCAATGGCCTGGACACTTACAAGTTGAAGCAGCACCTTATGGTTCAAGTAGCCTGAGTTTAGAAGTGGATACAGAATTGTTTATTGGACTGCCAAAGCAGGGTTGCTGA 747 0.427 MTKMDGIRQHPPFCGPRIIYNECHFAGSAILLAREMVRGKVQMKKIEDATSRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFAQNGRLYEFSSSDMSKILERYRKYTKDVPANKLGDDYIQQLKLESARMAKKIELLEISKRNLLGENVSCSYDELKGIEDQLQRSLLRVRERKAQLYTEQIDQLRSQESNLLQENAKLTEMWQGAEKTSQQQWPGHLQVEAAPYGSSSLSLEVDTELFIGLPKQGC 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02534 248 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677|GO:0046983
Phco6g02534 248 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Phco6g02534 248 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677|GO:0046983
Phco6g02534 248 Coils Coil 121 141 - -
Phco6g02534 248 Coils Coil 169 203 - -
Phco6g02534 248 Gene3D - 48 129 IPR036879 GO:0003677|GO:0046983
Phco6g02534 248 CDD MADS_MEF2_like 38 110 IPR033896 GO:0000977|GO:0045944
Phco6g02534 248 ProSiteProfiles K-box domain profile. 121 210 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco6g02534 248 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Phco6g02534 248 SUPERFAMILY SRF-like 38 109 IPR036879 GO:0003677|GO:0046983
Phco6g02534 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 38 197 - -
Phco6g02534 248 FunFam MADS-box transcription factor MADS-MC 48 119 - -
Phco6g02534 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 45 92 IPR002100 GO:0003677|GO:0046983
Phco6g02534 248 ProSitePatterns MADS-box domain signature. 38 92 IPR002100 GO:0003677|GO:0046983
Phco6g02534 248 Pfam K-box region 121 204 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco6g02534 248 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02534 Phco-Chr6 46833496 46865545 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco6g02534 K-box 1.4e-20 No_clan