LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco6g02513	ATGTCTTGTTCCTTTCCATCGATCACTTGCTCTGCCACGAACCCTAATTCGTCTTACATCCTCGGCTACTTTGTTCCTCTCGATAACTACCGGTTATCAATGGATGGGGTTAGAAATGAGTTGGGTACTGTGCATGAAGGTAGTTTTGATGTTCGGCCTCAGATGTTGAATAACTTGGACTTGAATGTGGAGCAGAACTGTTGTAGTCCAAACATGGCTCATGCTAGTGACAATCAATCCTGTCCTCCTTCAAAAAATGTACTCAGCGCCAATACTGTATTAGGAATTGGTACAGAATTTGAGTCTGATGATCATGGCTACCGATTCTACAACAAGTATGCCAGATTGGTTGGTTTCAATGTTAGAAAAGATTGGATAAATAGGAGTAAGGTGCATGGTCAGGTGGTGTCTAGGAAGTTTACCTGCTCCAAAGAGGGATACCGTAGGAAAGACAAAAGAGATGTCAATGTGAAGAAACATCGGAAGGAAACTAGAACTGGCTGCTTGGCACATATGATAGTCACTCGGCAGCCAAACGGTAAATACCAGGTCACCCATTTTGAAGCACAACATAATCATGACCATGTAAACCCTAACAATGCTAACGTGTTAAACTTGCTAAATGAATTCAGTGTTGCTCAAGCTGTGGAAGCTGAATCAAACAATAGTTTGGGACCTAAATCAAAGTCAGCATTAGATACGTTGAATAAAAAAACAACTGCACACGAATCTATTGATCTACTTTCAATGACTTATGACAATTATCTTCATTGTGCAAGGGAAAGAGATATGAGGGAAGGAGAAGCAGGGCGTTTGCTTGGTTATTTCCAAAGGCAGCACTTTGAAAATCCAACATTTTTTTATGCCATACAGCTTGATGTTGATGACAAGGTTAGCAATATTTTTTGGGCTGATGACAATATGGTGGTGGATTATGATCACTTTGGTGATGTCATTTGTTTGGATACAATTTGCAGAACAAATGAAGATCTTCGGCCATTTGTACAGTTTTTAGGTGTTAATCATCACAAACAAGTATTAGTATTTGCTGCTGCTTTTTTGTATGATGATTCCATTGAATCATTTAATTGGTTATTTCGAACTTTCATTAATGCAATGTCCGGTAAAAAGCCCAAGGCCATTCTCACAGAACAAGAAGCTGTAATCATTGAAGCAGTCAATACAGTTTTACCTGACACAAACCATTGTACATGTGTATGGCAGTTGTATGAGAACACTTTGAAACACCTCAGCCATGTTGTCAAGGATGCTGAATCTTTTGCAAATGTTCTACGGAGCAGTATCTATGACCCCAAGGATGAGGAAGAATTTACTCATTCTTGGGAGACTATGCTGGAGAAGTATAATCTGCAGCAAAATGAATGGCTGAGATGGATGTATAGAGAAAGAGAGAAATGGGCTGTTGTCTTTGGTCAGAATACATTTTTTGTAGACATCAAAGGCTTTCATTTAGCTGAGATTTTGTCTCATAAGTTTAGAAGTTATCTAAATCCTGACACTGATGTAGTTCAATTTTTTAAGCATTTTGAAAGGGTAGTAGGTGAACAGCGTTATAAAGAAATAGAAGCTGGTGATGAAATGAGCAGGTGTTTGCCAAGGCTAATGGGTAATGTGGTTTTGTTGAAGCATGCAATTAATATTTATACTCCAAGAGCATTTGAAGTATTTCAGCGAGCATATGAGAAGTCTTTAAATGTTATTGTTAATCAACACAGTAGAAATGGATCATTGTTTGAGTACAAAGCAAATACATTTGGGCATAATAGACAATACAGTGTCACCTTCAATTCCTCTGACAACACAGTTGTCTGCAGTTGTATGAAGTTTGACCGTGTTGGATTTCTGTGTGGCCACGCGCTTAAAGTTCTTGATCAAAGAAACATAAAAGTAGTTCCATCTCAGTACATCTTGGAGAGATGGACTGGAGATGCAAGGATGGGAAATCTTAGGGAGATTAGGCAATCTAAAATGCAAGATAATTCTAAAAGGGTTCCTGTTAGCTGTTACAAAGATTTGTGCCACGGACTGCTCAAGTTGTCAGCAAGAGCGTCTGAATCCGAGGAAGCCTATCAATTTGCCATGAGGCAACTTGATGAAATGATGGTAGGAGTGGAGAAAATCTTGACACTGAAAGCTGAAGGTCAAGTTATCACCTCACGAAATATTGATGAAGATGCTTCAGAAAGTGAGCCTGCAAAGATCTTTCTGAATGGGCATGTAGTTGACGAGCAGGATGAAAGTAACAGCGCAAATGGTGGAAAAGACAGGAGAGCCACGTCAGATAGGAGGCACTTAACAACCATGACATGTAATGGAGCTGATTCTGATAGGATTTTGAATGTAGAGGAATCTCCACAAAATACCGTTGTCTGTATTTCGAGCGCCCCCTCTACAAATGTTTCATCTCAGCCTGCAGCACCAAATCTCATTCTGCAGGGTTTGTACAGTTTTGAAGCCAATCAAGTGGTTCACTGCATGTATGAGCAGACTAATTTTGTTCTGGATAATCAATCTAATTCTAGCATGTTCCAACCGCAAAACATCTTTTCTAACCCACAGGATTCTTCTGGTCAATCTCAACTATTGCAGGAGCCTATAATCCAGAGCACATACCTTGAGTCCTTGCCAAGCAATAATCAGATGCGGCAGGGAATGGATCTTGACATCCAAAATCCTCATTCGTCTTCGTTCTTGCTATATGACCATAGATACAGAAGTTCTGAGTCTGCATGA	2754	0.3972	MSCSFPSITCSATNPNSSYILGYFVPLDNYRLSMDGVRNELGTVHEGSFDVRPQMLNNLDLNVEQNCCSPNMAHASDNQSCPPSKNVLSANTVLGIGTEFESDDHGYRFYNKYARLVGFNVRKDWINRSKVHGQVVSRKFTCSKEGYRRKDKRDVNVKKHRKETRTGCLAHMIVTRQPNGKYQVTHFEAQHNHDHVNPNNANVLNLLNEFSVAQAVEAESNNSLGPKSKSALDTLNKKTTAHESIDLLSMTYDNYLHCARERDMREGEAGRLLGYFQRQHFENPTFFYAIQLDVDDKVSNIFWADDNMVVDYDHFGDVICLDTICRTNEDLRPFVQFLGVNHHKQVLVFAAAFLYDDSIESFNWLFRTFINAMSGKKPKAILTEQEAVIIEAVNTVLPDTNHCTCVWQLYENTLKHLSHVVKDAESFANVLRSSIYDPKDEEEFTHSWETMLEKYNLQQNEWLRWMYREREKWAVVFGQNTFFVDIKGFHLAEILSHKFRSYLNPDTDVVQFFKHFERVVGEQRYKEIEAGDEMSRCLPRLMGNVVLLKHAINIYTPRAFEVFQRAYEKSLNVIVNQHSRNGSLFEYKANTFGHNRQYSVTFNSSDNTVVCSCMKFDRVGFLCGHALKVLDQRNIKVVPSQYILERWTGDARMGNLREIRQSKMQDNSKRVPVSCYKDLCHGLLKLSARASESEEAYQFAMRQLDEMMVGVEKILTLKAEGQVITSRNIDEDASESEPAKIFLNGHVVDEQDESNSANGGKDRRATSDRRHLTTMTCNGADSDRILNVEESPQNTVVCISSAPSTNVSSQPAAPNLILQGLYSFEANQVVHCMYEQTNFVLDNQSNSSMFQPQNIFSNPQDSSGQSQLLQEPIIQSTYLESLPSNNQMRQGMDLDIQNPHSSSFLLYDHRYRSSESA	917

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco6g02513	917	MobiDBLite	consensus disorder prediction	755	769	-	-
	Phco6g02513	917	Pfam	MULE transposase domain	318	412	IPR018289	-
	Phco6g02513	917	ProSiteProfiles	Zinc finger SWIM-type profile.	598	634	IPR007527	GO:0008270
	Phco6g02513	917	MobiDBLite	consensus disorder prediction	747	769	-	-
	Phco6g02513	917	SMART	26again6	609	636	IPR006564	GO:0008270
	Phco6g02513	917	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	87	712	IPR031052	GO:0006355
	Phco6g02513	917	Pfam	FAR1 DNA-binding domain	108	194	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco6g02513	Phco-Chr6	46566352	46569829	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Phco6g02513		MULE	6.2e-21	CL0219