Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02509 ATGCAAAATTCATCTTCCTTCTCCTACTCAAATCAAAGGAAAATGGAGGGCCCCAGTGAGATAGGTCTCATTGGGGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGACGATGAGTATGAAAGCCGCTCTGGAAGTGATAACTTCGATGGTGTATCTGGTGATGATCAGGATGGTGGTGATGATCAGCCACAGAGGAAGAAAAGATACCACAGACATACTCCTCACCAAATTCAAGAGCTCGAGTCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTCAGTAAGAGGCTTGGCTTGGAGAATAAGCAAGTGAAATTCTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAGTCTGATGAAGGAAGCCATGTCAAATCCAGTGTGCAACAGCTGTGGTGGCCCAGCGATTCCTGGCCAGATTTCATTTGAGGAGCACCAGATTAGAATCGAGAATGCTAGACTAAAAGATGAGTTGAACCGTATATGTGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCAATGACCAGTCCCATGGCTCTACCAAACTCAAATTCTGGTCTGGAACTTGGTATTGGAAGGAACGGGCTTGGTGGTTCAAGCACTCTTGGCACTCCCTTGCCAATGGGACTTGACTTGGGAGATGGAGTATTGGGCACTCAAACTGCAATGCCCGGGATTAGACCATCATTGGGGTTGATGGGAAATGAAGTTCAGCTTGAGCGATCTATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTGCTAAAGATGACTCAGGCAGAGAGCCCCCTTTGGATTAAGAGTTTGGATGGTGAGAAGGAAGTGTTTAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGTTATGTAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCTTCTATGATTGCTAGAGCTATCAACCTGGATGTTATATCCAATGGCATGGGTGGAACACGTAACGGTGCTCTACAAGTGATGCATGCTGAGGTACAATTGCTTTCACCACTAGTCCCTGTTCGTCAAGTGAGATTCATCCGGTTCTGTAAGCAGCATGCAGAAGGCGTATGGGCTGTGGTTGATGTTTCTATTGATATTGTTCATGATTCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAGCATTGGGAGTATGATGAGAGTGTTGTTCACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCGCATAGATGGATCGCCACTCTCCAAAGGCAATGTGAATGCTTGGCCATCCTCATGTCCTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAGGCTGGTCGGAGGAGCATGTTGAAATTGGCTCAACGCATGACTGGTAACTTCTGTTCGGGGGTTTGTGCTTCGTCTGCTCGTAAGTGGGACATGCTTCACATAGGGACTCTTGGTGATGACATGAAAGTGATGACTAGGAAAAACGTGGACGACCCTGGTGAGCCTCCTGGGATCGTGCTCAGTGCTGCAACTTCTGTTTGGATGCCAGTTTCAAGGCAAAGGGTGTTTGATTTTCTGCGTGATGAACGGCTGAGAAGTGAGTGGGACATCTTGTCCAACGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGCGTTTCCCTTCTCCGTGCTAATGCTGTTAATGCGAACGATAGCAGCATGCTGATTCTGCAAGAGACATGGATGGACGCTTCGTGCTCGGTGGTGGTATATGCGCCAGTTGACGTGCAATCACTGAACGTGGTGATGAGTGGGGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTCGCCATTCTCCCCGATGGTCACTGCAACAACAACAGCAGTTGCAATGGGACAATGCAGAAGGGCGGCGGTGGCGAAGAGAGCGGGGGAAGCCTTCTGACAGTGGGGTTCCAAATTCTGGTGAACAGTCTCCCAACAGCAAAGCTCACAGTGGAGTCAGTGGACACTGTGAATAACCTCATTTCATGCACCATTCAGAAGATCAAAGGCGCTCTCAGAGTTGCATAA 2301 0.475 MQNSSSFSYSNQRKMEGPSEIGLIGENFDAGLMGRMRDDEYESRSGSDNFDGVSGDDQDGGDDQPQRKKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKEAMSNPVCNSCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSMTSPMALPNSNSGLELGIGRNGLGGSSTLGTPLPMGLDLGDGVLGTQTAMPGIRPSLGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEVFNHEEYARLFSPCIGPKPTGYVTEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIDIVHDSANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDESVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTGNFCSGVCASSARKWDMLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWMPVSRQRVFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCNNNSSCNGTMQKGGGGEESGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKGALRVA 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02509 766 SUPERFAMILY Bet v1-like 529 760 - -
Phco6g02509 766 MobiDBLite consensus disorder prediction 1 15 - -
Phco6g02509 766 FunFam Homeobox-leucine zipper protein HDG1 54 141 - -
Phco6g02509 766 Gene3D - 55 141 - -
Phco6g02509 766 SUPERFAMILY Bet v1-like 270 501 - -
Phco6g02509 766 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Phco6g02509 766 SMART HOX_1 66 129 IPR001356 GO:0003677
Phco6g02509 766 CDD homeodomain 67 125 IPR001356 GO:0003677
Phco6g02509 766 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Phco6g02509 766 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Phco6g02509 766 MobiDBLite consensus disorder prediction 1 75 - -
Phco6g02509 766 SUPERFAMILY Homeodomain-like 52 125 IPR009057 -
Phco6g02509 766 Coils Coil 119 154 - -
Phco6g02509 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 763 IPR042160 -
Phco6g02509 766 Pfam START domain 278 501 IPR002913 GO:0008289
Phco6g02509 766 MobiDBLite consensus disorder prediction 32 46 - -
Phco6g02509 766 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Phco6g02509 766 CDD START_ArGLABRA2_like 272 500 - -
Phco6g02509 766 SMART START_1 277 501 IPR002913 GO:0008289
Phco6g02509 766 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02509 Phco-Chr6 46527623 46531804 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco6g02509 START 6.3e-47 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00540 4 3938080 3943363 Phco6g02509 6 46527623 46531804 ECH
Phco6g02509 6 46527623 46531804 Phco6g02509 6 46527623 46531804 ECH