Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02507 ATGCACCGGAAGCCATTGACGATCTCATGGAACTGCACAATCACGCAAAGAACTTCGGGCATAGAATCGGCTATCAGGTCCAAGCTCTTCTCCATCCTCCAAATCAACAACCTCCGTTCCTCCTCGACGATCTTTGCGGGTCAGACTGCGCTGGTGCATGAGCAGAAGTTAACCCATAGAGGGGGACTACAGTGGTGTGGGAGATCTGAGATTTGCAAACTGGGCATGTCTTCTGCTGGTCTGCTTCAACAGAGGAGTTTTGAACATCAAGCCACTTGTATAAGCATGGCCAACTGTAAAGGTGACCACAGGGGAAAAAACTGGAATGGCAAAAGGCTGGGAATAGGAGTTGCAGGGTTTGAAAATATTGGGAAAGTGGAGATGCTTCCGGGGAAGAGACAGCTCCTCTCACTCAAACCAACAACTCCTTCATTTCATGGCAATGCCTGGCTTTCGTGCTCCTTCTACTGCTACCCATTATCTTCAACCTTCTCCAACGCTATTTGCATGCTCCATATTCCTCTAAACAAACCAAACCCTTCTTTCATTCTTACCTCTCCCACTGTCTTCATGGCTCTTCCCTTCAGCCTCGTACTCTGCTACCTCGTCCTGTTCTTGTTGCGTTTTCTGCATGCCACCGCAGACCAAAACAACGACAAGCTTCACCTTCTTTCCTTCAAAGAGGGTCTCCAAAACCCTCACGTCCTCCCCTCCTGGCACTCGGCCACCCCGCACTGCGACTGGGTCGGCGTCACGTGCCAACTCGGCCGGGTCACCTCGCTCACTCTTCCAAACCGCAACCTCAGAGGAACACTCTCTTCGTCGCTCTTCTCCCTCTCTTCACTCTCTCTCCTCAACCTACGTGAAAACCAGCTCACAGGTGAGATCCCCGGCGAGCTCGGTGGGTTGCTTCAGCTCGAAACTCTCCGACTAGGCTCCAACTTGCTCACCGGGAATATCCCGCCGGAGGTGGGGCTCTTGAGGAAGCTATGTACTCTCGACCTCTCCGGGAACTCGCTCGTTGGAGAAGTGCCGGATAGTGTCGGGAATTTGACCCGGCTTGAGTTTCTCGACCTCAGTAACAACTTTTTATCCGGTTCTCTTCCGGTTAGTCTCTTCTCCGGAGCGAGGTCTTTGATTTCCGTTGATATATCGAACAACTCGTTTTCCGGCGTAATCCCGCCGGAAATCGGGAACTTGCGGAACATCAGTGCTCTTTACGTGGGGATTAACAAGTTGTCTGGGACTTTGCCGAGGGAGATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCTCCTTCCTGTTCCATCGAAGGTCCTTTGCCCGAGGAAATGGCGAAGCTGAAAGCATTGACCAAGCTTGACCTTTCTTACAACCCCTTGAGGTGTTCGATTCCCAAGTTCATTGGGGAGTTGGAGAGTTTGACAATTTTGGACCTTGTGTTTGCCCAGCTTAATGGGTCGGTGCCTGCAGAGCTTGGGAAATGCAAGAATTTGAGGTCTGTGATGCTTTCTTTCAATTCACTCTCTGGGTCTCTGCCTGAGGAGCTTTCTGAGCTTCCCATGTTAACCTTTTCTGCTGAAAAAAATCAGCTTCATGGGCCTTTGCCTTCTTGGCTGGGGAAGTGGAGCAATATCGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTTATTCCTCCTGAACTTGGAAATTGTTCTGTGATGGAGCACCTCAGCTTAAGTAGTAATTTGTTGACGGGTCCTATTCCTGAGGAGCTTTGTAATGCTGCCTCACTCTTGGAGGTTGATCTTGATGACAACTTTCTCTCTGGTACTGTTGAGAAAGTTTTCGTCAAGTGTAAGAACCTTACGCAGTTGGTTTTGATGAATAATCGGATTGTTGGTTCTATACCTGAGTATCTTTCTGAGTTATCCTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGTGGGAAAATACCTTCTGGACTGTGGAACTCATTGGCTCTGATGGAATTCTCCGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAATGCGATTATGCTGGAGAGGCTCGTTCTTAGCAATAATCGTCTAACAGGTACTATTCCAAAGGAAATTGGGAGACTCTCAAATCTTTCAGTTCTTAATTTGAATGGGAATATGCTTCAAGGGAGTATCCCAAATGAGCTTGGTGGTTGCACTTCCCTCACTACACTGGACCTTGGAAATAATCAGCTGAACGGGTCTATTCCTGAGAAACTGGTTGAACTGAGCCAATTGCAGTGCCTGGTTCTTTCTCACAATAATCTATCTGGGTCTATTCCTGGCAAAAAGTCTTCATATTTTCGACAGCGTAGCATCCCTGATCTGAGCTTTGTTCAGCATCTTGGTGTGTTCGATCTCTCTCACAATAGATTGTCTGGCCCCATACCCGATGAACTTGGGTTTTGTGTGGTGGTTGTGAATCTCTTAGTTAGCAACAACATGCTTTCTGGTAGCATTCCTAAGTCACTGTCACGCTTGACGAATCTTACAACTTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCACCAGAGCTTGGAGGTGTGCTCAAGCTCCAGGGTTTGTATTTGGGACAGAATCAGCTTTCAGGTACCATCCCTCAAAGCTTGGGAAAGTTGAGTAATTTGGTGAAGCTGAATTTGACAGGAAATAAGTTGTCTGGTCCAATTCCGGTCAGTTTTGAGAACATGAAAGGGTTTACTCACTTGGACCTGAGCTCTAATGAGCTCAGTGGCGAGCTTCCTTCCTCTCTTTCAGGAGTGCAAAGCCTTGTTGGGATTTACGTGCAGAATAACAGGCTTTCGGGACAAGTAGGGGAACTTTTCTCAAACTCCATGACATGGAGGATTGAGACGGTGAATTTAAGTGATAATTGCTTCACTGGGAACTTGCCGCGGTCTTTGGGAAATCTTTCGTGCTTGACAAACTTGGATCTTCATGGAAATATGTTGACTGGAGATATTCCTTTAGACCTTGGGTATCTTATGCAACTGGAATATTTTGATGTTTCAGGTAATAAACTATCTGGAAGGATTCCAGACAAGTTATGCGGCCTAGTTAATCTGATTTACCTAGATGTATCTCGAAACAGGTTGGAAGGGCCCATACCAAGTAATGGTATTTGCCTGAACCTACCCATAGTTAGAGTTGCTGGGAACAGAAACCTTTGTGGCCAGATGTTGGGTATAAATTGTCAGGATAAAAGCATTGGAAGATCAGTACTGTATAATACATGGCGGCTTGCTGCAATTGCGTTTACCATTTTACTGCTAACTCTGAGCATTGCTTTTGTGCTGCATAAATGGATTACTAGGAGGCAAAATAATCCTGAGGAGCTTAAGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTTTTGAGCAGTAGCAGATCAAAGGAGCCATTGAGTATCAATGTTGCAATGTTTGAGCAGCCTCTTCTGAAATTAACTTTGGTGGACATCCTTGAAGCAACTGACAACTTCAGCAAGACAAATATAATTGGAGATGGAGGTTTTGGAACTGTGTACAAGGCCACTCTACCTAATGGAAAAACAGTTGCTGTGAAGAAACTTAGTGAGGCAAAAACGCAAGGTCATCGTGAGTTCATGGCTGAAATGGAAACCTTGGGCAAGGTGAAGCATCAAAATCTCGTTGAATTGCTTGGATATTGCTCAATCGGCGAGGAGAAACTCCTTGTTTACGAATATATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAGGACTGGGGCACTTGAAATCCTGGACTGGAACAAACGTTACAAAATCGCAACTGATGCAGCCCGAGGATTAGCTTTCCTTCATCATGGTTTTATACCCCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTGCTCAATGAAGATTTTGAGCCAAAGGTTGCGGACTTTGGACTGGCAAGACTTATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGTTACATTCCACCTGAGTATGGACAGAGTGGGAGATCCACAACAAGAGGAGATGTTTATAGTTTTGGTGTCATTTTGCTTGAACTTGTGACTGGGAAAGAGCCGACAGGACCAGATTTTAAGGAGATTGAAGGTGGTAACTTGGTTGGATGGGTTTGTCAGAAGATCAAGAAGGGGCAGGCTGCTGATGTGCTTGATCCATCCGTACTTGATGCTGATTCAAAGCAGATGATGCTTCAAACGCTGCAAATTGCTTGTGTGTGCATATCTGAGAATCCTGCAAACAGGCCTACCATGCTTCAAGTGCACAAATTCTTGAAGGGGATGAAGGAAGAGTAG 4380 0.458 MHRKPLTISWNCTITQRTSGIESAIRSKLFSILQINNLRSSSTIFAGQTALVHEQKLTHRGGLQWCGRSEICKLGMSSAGLLQQRSFEHQATCISMANCKGDHRGKNWNGKRLGIGVAGFENIGKVEMLPGKRQLLSLKPTTPSFHGNAWLSCSFYCYPLSSTFSNAICMLHIPLNKPNPSFILTSPTVFMALPFSLVLCYLVLFLLRFLHATADQNNDKLHLLSFKEGLQNPHVLPSWHSATPHCDWVGVTCQLGRVTSLTLPNRNLRGTLSSSLFSLSSLSLLNLRENQLTGEIPGELGGLLQLETLRLGSNLLTGNIPPEVGLLRKLCTLDLSGNSLVGEVPDSVGNLTRLEFLDLSNNFLSGSLPVSLFSGARSLISVDISNNSFSGVIPPEIGNLRNISALYVGINKLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMAKLKALTKLDLSYNPLRCSIPKFIGELESLTILDLVFAQLNGSVPAELGKCKNLRSVMLSFNSLSGSLPEELSELPMLTFSAEKNQLHGPLPSWLGKWSNIDSLLLSANRFSGVIPPELGNCSVMEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGTVEKVFVKCKNLTQLVLMNNRIVGSIPEYLSELSLMVLDLDSNNFSGKIPSGLWNSLALMEFSAANNRLEGSLPVEIGNAIMLERLVLSNNRLTGTIPKEIGRLSNLSVLNLNGNMLQGSIPNELGGCTSLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGSIPGKKSSYFRQRSIPDLSFVQHLGVFDLSHNRLSGPIPDELGFCVVVVNLLVSNNMLSGSIPKSLSRLTNLTTLDLSGNLLSGSIPPELGGVLKLQGLYLGQNQLSGTIPQSLGKLSNLVKLNLTGNKLSGPIPVSFENMKGFTHLDLSSNELSGELPSSLSGVQSLVGIYVQNNRLSGQVGELFSNSMTWRIETVNLSDNCFTGNLPRSLGNLSCLTNLDLHGNMLTGDIPLDLGYLMQLEYFDVSGNKLSGRIPDKLCGLVNLIYLDVSRNRLEGPIPSNGICLNLPIVRVAGNRNLCGQMLGINCQDKSIGRSVLYNTWRLAAIAFTILLLTLSIAFVLHKWITRRQNNPEELKERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKTNIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHQNLVELLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATDAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVCQKIKKGQAADVLDPSVLDADSKQMMLQTLQIACVCISENPANRPTMLQVHKFLKGMKEE 1459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02507 1459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1303 1315 IPR008271 GO:0004672|GO:0006468
Phco6g02507 1459 Pfam Leucine rich repeat N-terminal domain 217 253 IPR013210 -
Phco6g02507 1459 SUPERFAMILY L domain-like 528 777 - -
Phco6g02507 1459 Gene3D Phosphorylase Kinase; domain 1 1144 1256 - -
Phco6g02507 1459 FunFam leucine-rich repeat receptor protein kinase EMS1 373 523 - -
Phco6g02507 1459 Pfam Protein tyrosine and serine/threonine kinase 1184 1453 IPR001245 GO:0004672|GO:0006468
Phco6g02507 1459 SMART serkin_6 1181 1453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02507 1459 Pfam Leucine rich repeat 689 747 IPR001611 GO:0005515
Phco6g02507 1459 Pfam Leucine rich repeat 891 951 IPR001611 GO:0005515
Phco6g02507 1459 ProSiteProfiles Protein kinase domain profile. 1181 1453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02507 1459 SUPERFAMILY Protein kinase-like (PK-like) 1162 1453 IPR011009 -
Phco6g02507 1459 SMART LRR_typ_2 279 303 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 988 1012 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 351 375 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 710 734 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 327 350 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 842 866 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 448 472 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 890 913 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 735 758 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 1036 1061 IPR003591 -
Phco6g02507 1459 SMART LRR_typ_2 794 818 IPR003591 -
Phco6g02507 1459 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 790 1086 - -
Phco6g02507 1459 FunFam serine/threonine-protein kinase BRI1-like 2 1257 1459 - -
Phco6g02507 1459 FunFam Leucine-rich repeat receptor protein kinase EMS1 524 783 - -
Phco6g02507 1459 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 706 1455 - -
Phco6g02507 1459 ProSitePatterns Protein kinases ATP-binding region signature. 1187 1210 IPR017441 GO:0005524
Phco6g02507 1459 Gene3D Transferase(Phosphotransferase) domain 1 1257 1459 - -
Phco6g02507 1459 SMART LRR_sd22_2 866 895 - -
Phco6g02507 1459 SMART LRR_sd22_2 1012 1038 - -
Phco6g02507 1459 SMART LRR_sd22_2 734 760 - -
Phco6g02507 1459 SMART LRR_sd22_2 351 372 - -
Phco6g02507 1459 SMART LRR_sd22_2 914 940 - -
Phco6g02507 1459 SMART LRR_sd22_2 988 1009 - -
Phco6g02507 1459 SMART LRR_sd22_2 615 638 - -
Phco6g02507 1459 SMART LRR_sd22_2 842 857 - -
Phco6g02507 1459 SMART LRR_sd22_2 448 474 - -
Phco6g02507 1459 Gene3D Ribonuclease Inhibitor 216 374 IPR032675 -
Phco6g02507 1459 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 216 369 - -
Phco6g02507 1459 SUPERFAMILY L domain-like 790 1075 - -
Phco6g02507 1459 SUPERFAMILY RNI-like 260 581 - -
Phco6g02507 1459 FunFam serine/threonine-protein kinase BRI1-like 2 1142 1256 - -
Phco6g02507 1459 Gene3D Ribonuclease Inhibitor 525 783 IPR032675 -
Phco6g02507 1459 Gene3D Ribonuclease Inhibitor 375 524 IPR032675 -
Phco6g02507 1459 Gene3D Ribonuclease Inhibitor 784 1086 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02507 Phco-Chr6 46487751 46495642 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco6g02507 PK_Tyr_Ser-Thr 5.7e-47 CL0016