Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02506 ATGCTTATGCTCTCAATCCAACGCAATGCAACTATCAATTTGTTACCAACCCAACCCACATGGGAAGAAGTTTCGCGAGAAAAAAAAGAGGGGAAACCCCTCCTTCGCCATTTCCATTCCATGGCTCCGCCGCTGGAACACAACAGCGACTCCACCAGCGCCGAGTCTCAGAGATCCATTCCGACTCCGTTTCTCGCCAAAACCTACCAGCTCGTCGACGATCCAACCATCGATGATGTCATTTCCTGGAACGATTCTGGATCATCCTTCATCGTTTGGAACACCACCGTTTTTGCCAGGGATTTGCTTCCTAAATATTTCAAGCACAACAACTTTTCCAGCTTCGTCCGCCAACTCAACACCTATGGATTCAGAAAAGTTGTGCCTGATCGGTGGGAATTCTCCAACGAGTGTTTCCGAAGAGGCCAGAAGCGGCTTCTCTGCGAAATTCAGCGGCGGAAGATCCTCTCCTCGTCGCCGCCAGCCAGAGCAACTGCTAGCGTGGCGGTTCCGTCGCTGCTGACGCCCTCCACGATTCCGATAGCGAAGTCGATGGTGTCGCCGTCGAACTCAACGGAGGAGCAGGTGATCTCGTCGAACTCGTCGCCATCGAGAGTGCCGGCAGAGCTGTTGGACGAGAACGAGCGGCTGAAAAAGGAGAACATTCTTTTGACGAAGGAATTGGAAGAGATGAGATCCCTCTGCAACAACATATTCAATCTCATGTCGAATTACGCAACCGCTAGAGCGGACGGTGGTGCCGAGGCGGTGAAAACGCTTGGCTTGATGCCGTCGAAGCGGTGCTCCGGTGAGGGCGCGGTGGAGGAGATGAATCCAAAGCTATTTGGAGTGGCGATTGGTACGAAGCGATCGAGAGAGGAAGGACGTGGAGCGGAATTCGATACGGTTTTGAGTCTGCATCAGTTCCACGAGGACATGAAATCTGAACCGTTAGATTTCGAAAGACCTGGAGAAAACAGAATTACTTCGTGGCTAAATCACTATCGCACAGCAAATGAGAGAGTGTGTAATTGA 1035 0.5159 MLMLSIQRNATINLLPTQPTWEEVSREKKEGKPLLRHFHSMAPPLEHNSDSTSAESQRSIPTPFLAKTYQLVDDPTIDDVISWNDSGSSFIVWNTTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGQKRLLCEIQRRKILSSSPPARATASVAVPSLLTPSTIPIAKSMVSPSNSTEEQVISSNSSPSRVPAELLDENERLKKENILLTKELEEMRSLCNNIFNLMSNYATARADGGAEAVKTLGLMPSKRCSGEGAVEEMNPKLFGVAIGTKRSREEGRGAEFDTVLSLHQFHEDMKSEPLDFERPGENRITSWLNHYRTANERVCN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02506 344 SUPERFAMILY "Winged helix" DNA-binding domain 61 153 IPR036390 -
Phco6g02506 344 SMART hsfneu3 60 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02506 344 Coils Coil 214 234 - -
Phco6g02506 344 PRINTS Heat shock factor (HSF) domain signature 115 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02506 344 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02506 344 PRINTS Heat shock factor (HSF) domain signature 64 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02506 344 Pfam HSF-type DNA-binding 64 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02506 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 55 245 IPR027725 -
Phco6g02506 344 FunFam Heat stress transcription factor B-4 56 154 - -
Phco6g02506 344 ProSitePatterns HSF-type DNA-binding domain signature. 103 127 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco6g02506 344 Gene3D - 56 154 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02506 Phco-Chr6 46474282 46476425 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco6g02506 HSF_DNA-bind 1.6e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02506 6 46474282 46476425 Phco6g02506 6 46474282 46476425 ECH
Phco5g00649 5 6559662 6560789 Phco6g02506 6 46474282 46476425 PCT