Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02493 ATGGGGTGCCAGCCATTGGAAAAGGGAAAACCAAAACATAAGAAGGGGTTATGGTCTCCTGAAGAAGACAATAAACTCAGAAACTACATCCTTAAACATGGTCATGGCTGTTGGAGTTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAGAGTTGCAGACTAAGATGGATAAACTATCTAAGGCCAGGATTAAAGAGAGGGAAGTTCAGCAAACAGGAAGAAGAGACAATCCTGACCCTTCACCACATGCTAGGCAACAAGTGGTCACAGATATCACAGCATTTGCCAGGAAGAACAGACAATGAGATTAAAAACTACTGGCATTCATATTTGAAAAAGAAAGTGGCCAAAGCTAAGGAAATGGATTTTCATAACCAAATGAAGTATGCTAGCTCAAGCTCAGATACCATGGACTCTTCAAATTCTCTCCAAAAACTTGCAACTCAAGGTACACAGAATTTTAACTTCACCAATGAGGCTTGTCAGAGCTCCTTACCAAAATTGTTATTTGCTGAGTGGCTTTCATTGGATCAAGTAAACTCTGCAAATTCAGTTGACTCTTTTGGTTTGAGGAATGGATTTGATCAAAATTCAACTCTTGAGGAAGCTTCAATTCATGATATGTCAGAGGTACCCTTTGGTGGAGGGTACCATAGATGCTTGGCAAACATTTCAGCCCCTGAGATGTTCAATTCAGAGCTGAAGTATGCAAATGAGATGGTGGAAAATGGTTTCATCCATTGTGTGCCTGGATTTGACTTGAGTAGCAATTTCAGCATGAGCAATGATGCCATAATGTACATATAA 813 0.4047 MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKVAKAKEMDFHNQMKYASSSSDTMDSSNSLQKLATQGTQNFNFTNEACQSSLPKLLFAEWLSLDQVNSANSVDSFGLRNGFDQNSTLEEASIHDMSEVPFGGGYHRCLANISAPEMFNSELKYANEMVENGFIHCVPGFDLSSNFSMSNDAIMYI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02493 270 Gene3D - 69 142 - -
Phco6g02493 270 CDD SANT 18 62 IPR001005 -
Phco6g02493 270 FunFam MYB transcription factor 70 141 - -
Phco6g02493 270 FunFam MYB transcription factor 12 68 - -
Phco6g02493 270 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Phco6g02493 270 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Phco6g02493 270 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Phco6g02493 270 SMART sant 67 115 IPR001005 -
Phco6g02493 270 SMART sant 14 64 IPR001005 -
Phco6g02493 270 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 215 224 IPR017972 GO:0005506|GO:0016705
Phco6g02493 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco6g02493 270 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Phco6g02493 270 Gene3D - 15 67 - -
Phco6g02493 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Phco6g02493 270 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Phco6g02493 270 CDD SANT 70 113 IPR001005 -
Phco6g02493 270 PANTHER MYB DOMAIN PROTEIN 55 8 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02493 Phco-Chr6 46338763 46340905 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g02493 Myb_DNA-binding 2e-12 CL0123