Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02466 ATGTCAGAATCTGAGGAAGAAAATACAGACTATGTTACAAGGTCAAAGCCTGCAGAGGAAGCTGGCTGCACCATGGACTTCGATCTGGACTTAGAAACTTCATGGCCTTTGGATCACATGGCCTTTGTCTCCAATCCCATGTCACCTTTTCTGTTCTCCTCCACCTCTGACCAGCCTTACTCTCCTCTATGGGCTTTCTCTGATGGAGAAGACCCCAAGCTTCCAGCTTCTGCCTTCTCTGATTGCCACAAGATCTTCCCTTGTGATTCAAATTCAATAGCTGAAAAACCAGAGGAGAATGATGACAACAAGAAGCCTTTGCCACCACTTGCGCCTATGCCACCGGTGGAAAATGTGGGCGGATATTGTGTAATCAAGGAAAGGATGACACAAGCGCTTCGACACTTCAAAGAGTTGACTGAATTGAATGTTTTGGCTCAAGTTTGGGCACCTGTGAGGAATGGTAATCGGTATGTGCTTACAACTTCAGGTCAACCATTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATCGGACGGTCTCTCTGATGTACATGTTTGATGTGGACGGGGAGAATGATGGAAGTTTGGGACTCCCTGGTCGGGTTTTTCAGCAGAAGTTACCAGAATGGACTCCCAATGTTCTGTATTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGATCTTTGGCTTTGCCCGTGTTTGAGCCTGCATTGCAGTCATGTGTTGGTGTGCTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCCGAGGTTGATAAAATCTGCAAAGCCCTTGAGACAGTAAATTTGAGGAGTTCGGAAATTTTGGACCATCCATACACTCAGATATGTAATGAAGGCCGTCAGAATGCTTTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCCCAAACATGGATTCCCTGTAAGCATCGGATTGTCTTGGCCCAAGGTGGTGGTGTGAAGAAAAGTTGTTCTAGTTTTGATGGTAGCTGCATGGGGAAAGTTTGCATGTCTACAACTGACATAGCATTCTATATTATAGATGCTCATTTATGGGGTTTCCGTGAGGCCTGTGTTGAGCATCACTTGCAACAAAGTCAAGGGGTTGCGGGGAGGGCTTTTTTGTCCCAGAGCATGTGCTTCTGTTCAAACATTACTCAATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCTCTCATGTTTGGATTAACGAGCTGTTTTGCAATATGTTTACGAAGCTCTCATACAGGAACTGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAGGGTCACAGACTTTCATGAACAAAAAACTTTGTTGGCGTCCATATTGGCAACAATGAAACAGCATTTCCAGAGTCTTAAGGTTGCTTCTGGTGTTGAACTTGAGGATGGTTCAATTGAAATTATTGAAGCAACAATTGAAAGAATTCACACGAGGCTTGAATCTATTCCAATTGCCCCATCTTTTAGATCACCACCTAGACCTGATACTTCACCAAATATGGAGGAGGAAGTTCCACGTGATCCATCAGAACAACAACACATATTGATGTACTGTAATGGTACCAATCATGGAGCGAATCTTAGTGATAAAGCAGGTGGAAAAATTAATCATATGACTACTTTAGAGACTAAAAACTCAAAGAAACCCTTAGAGAGGAAACGTGGAAAAACTGAGAAATCAATCAGTCTTGAAGTCTTGCAACGATATTTTGCTGGGAGTCTAAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACCACAATGAAGCGCATCTGTAGGCAGCATGGGATATCACGTTGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCCTGTCCAAGCTCAAGCGTGTTATTGAATCTGTCCAGGGTGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGCACAAGTCCACTTCCCATTGCTGTTGGGTCGCTTCCTGAACCCTCTACTCCAAACAAGTGCAGCCAGCAAGTCTCAATGGGGATTAGACCATCAGAGCCTCAGATGAAAGTGAATGAATTGAATGCCTCCAAAGAATTAGAAACAAACAGACAAGCAGGAATGGAGGATCAATTGGTAGGAGGAAGGATAAGGAATCTTGAGAGAGTTAGTAATGATAAAGGAGGTTCTACTCAGGAGGTTGGGAGAGAACCGAAAAGGACTAGAACTGGGAGTGGCTCAAGTGAGGATAGCACAAATCCTACTTCTCACGGTTCGTGGCATGACAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACTTCCAACCATGATCAATGTGCTGTCGTAAGGAGATCATCACCAGGGTCAACACTGCAGCCAGCCACTGATACACCAAACCACCCTACTTCTTACCCTTTGCCTGAATTTGTGTCTGCAGAACTTCAAGAGCCATTTGGGGGGATGCTAATAGAGGATGCTGGTAGTTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCTGAGGCCATTTTGGAGGATCTGGTTCCTGAAGCTTGTGGGACTAATCCTCCAGCCTTGGATTTGTCTCCCAAGCAAAGCATGGGTACTCCTAACAAAGTAGTGACACCTTTTGCAGCTATGAAAGAAATGAAGACTGTAACTATCAAGGCAACATACAGGGAAGATATCATAAGATTCCGGGTCTCATTGGCATGTGGCATTGTGGAACTTAAAGAAGAAGTTGCCAAAAGATTGAAACTAGAGGTGGGTACATTTGATATCAAGTACCTTGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTCTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACGTCCAATCTTGGAAGCTCATGTGAGAGCTCGGGGGAGTGA 2976 0.4365 MSESEEENTDYVTRSKPAEEAGCTMDFDLDLETSWPLDHMAFVSNPMSPFLFSSTSDQPYSPLWAFSDGEDPKLPASAFSDCHKIFPCDSNSIAEKPEENDDNKKPLPPLAPMPPVENVGGYCVIKERMTQALRHFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFDVDGENDGSLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGSLALPVFEPALQSCVGVLELIMTSQKINYAPEVDKICKALETVNLRSSEILDHPYTQICNEGRQNALSEILEILTVVCETHNLPLAQTWIPCKHRIVLAQGGGVKKSCSSFDGSCMGKVCMSTTDIAFYIIDAHLWGFREACVEHHLQQSQGVAGRAFLSQSMCFCSNITQFCKTDYPLVHYALMFGLTSCFAICLRSSHTGTDDYVLEFFLPPRVTDFHEQKTLLASILATMKQHFQSLKVASGVELEDGSIEIIEATIERIHTRLESIPIAPSFRSPPRPDTSPNMEEEVPRDPSEQQHILMYCNGTNHGANLSDKAGGKINHMTTLETKNSKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGGAEGAFGLNSLSTSPLPIAVGSLPEPSTPNKCSQQVSMGIRPSEPQMKVNELNASKELETNRQAGMEDQLVGGRIRNLERVSNDKGGSTQEVGREPKRTRTGSGSSEDSTNPTSHGSWHDSPPNESSPVKDIFITSNHDQCAVVRRSSPGSTLQPATDTPNHPTSYPLPEFVSAELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLVPEACGTNPPALDLSPKQSMGTPNKVVTPFAAMKEMKTVTIKATYREDIIRFRVSLACGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGSNIIRVLVHDITSNLGSSCESSGE 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02466 991 MobiDBLite consensus disorder prediction 752 780 - -
Phco6g02466 991 MobiDBLite consensus disorder prediction 675 690 - -
Phco6g02466 991 MobiDBLite consensus disorder prediction 90 112 - -
Phco6g02466 991 SMART PB1_new 896 978 IPR000270 GO:0005515
Phco6g02466 991 MobiDBLite consensus disorder prediction 670 780 - -
Phco6g02466 991 MobiDBLite consensus disorder prediction 509 529 - -
Phco6g02466 991 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Phco6g02466 991 Gene3D - 893 977 - -
Phco6g02466 991 Pfam RWP-RK domain 585 633 IPR003035 -
Phco6g02466 991 CDD PB1_NLP 897 977 IPR034891 -
Phco6g02466 991 ProSiteProfiles PB1 domain profile. 896 978 IPR000270 GO:0005515
Phco6g02466 991 FunFam RWP-RK domain-containing protein 893 977 - -
Phco6g02466 991 MobiDBLite consensus disorder prediction 1 23 - -
Phco6g02466 991 MobiDBLite consensus disorder prediction 793 817 - -
Phco6g02466 991 Pfam PB1 domain 896 977 IPR000270 GO:0005515
Phco6g02466 991 MobiDBLite consensus disorder prediction 793 815 - -
Phco6g02466 991 PANTHER PROTEIN NLP8 57 990 IPR045012 GO:0003700
Phco6g02466 991 SUPERFAMILY CAD & PB1 domains 892 981 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02466 Phco-Chr6 46044867 46048966 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Phco6g02466 PB1 6.4e-19 CL0072