Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02462 ATGGGTAGCATCGTGGCGGAAGATGCGGACACTGACACAGTGTATGTGGCAGTGGGAAAGAACGCGGAGAAGACGCATCAACTGTTGCATTGGACGGTTAAGAATTTCTCTGGCAAGAATGTTTGTCTTCTTCATATTCACCGACCTTACTCCCTCAATTCGTTCTCATGTGGAACAGACAGGAATCTCTCTGGGTATGAACCGAAAGAACTTACAGTCCAGGCATTCCAGGACCAGGGAAATCAAGCAGTGCATGAACTTCTAGACCAATACATTCTTACTCTGGTTCTGGCAGGGGTACGGGCCTGTAAATTGTTGATTGAGATGGATGATATTGAGAAAGGGATCACAAAAGCTATTGCTCAACACAGTATTAGATGGCTTGTAGTGGGAGCAGCAGCAGATGAATATAACATGGGCAAACTGGCAAAGCAAGATTCGGAGAAGGCTAATTTTATACGTGAACAAGCATTGCTATCCTGTAATATTTGGTTCATTTGCAAGGGCAACCTCATATGTACTAGGGTATATAGTAAGCATACTTCTGACATTGAGAGTGGACCTGCATTGTTGGTGCTCAATTCAAATACAGAAAAGACTAAATCGGAATTGAATCCTGATGCATTGAAATATTTAGATTCTGATGATATGAAAGAAATCCAAAGTATCAGTTCCCACCGTTCCTTAAATACCAAATGGTCCTTTAATAAGGTCATGGACAGGTCAAAGTTGGCAGATTTGATGTTTCATGAGGATGAAGCATTCGAAAGCCAGTGTGCTACGGAAATAAGAAGAAGAAAAGAAGTTGAAGAACAATTGGCAAGGTCAAAGCAAGAAGTACAGAAAATGAAGAGTCAGCAGGATGAAATATTTCAAGAATTGCAAATGGTCAAAGACCAAAGTTCTGCACTTATGAACCAAATTTCTGAGTCCCAGTGTACGGCAACAGAGTTTGAGGAGAAGATCATATCAGCTGTGGACCTCTTGATAAGTTTCAGGGAAAAGAGAGATAGGCTTAGAATAGAGCATGCAAATGCAGTTAGGGAAGTCCAAGTGCTTAGAAAATTTGGTGAAGCAGATACTTCCTTCTCTTATCAGGTAGAATTCCCTGCATTTTCTTTCTTGGAGATCAATGAGGCAACTCATGATTTTGATCCGTCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTCGTGAGAGTCTATCAGAGTTCCAAAATCAGGTAGAGGTCTTGAGCAGGGTAAGACATCCAAACTTGTTAATACTAATTGGAAGCTGTGCAGAGTCTAGGTCACTTGTGTATGAGTATCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCGCAAAGAAAAGAATCCACTTCCATGGCAAATTCGAATATCCATTGCTACAGATATATGCTCAGCTCTAATCTTCATTCACTCCAGCAAGCTTTGTATTATCCATGGGAATTTGAAACCTAGTAAGGTTCTCCTTGATGCTAACTTTGTTGCCAAACTGAGTGACTTGGGCATTCCTAGTTTAGTCCAGCAAAGTTTGCATTCAGCTGATGCAAGGACAATATGTAACAACCCAAATGAACGTTTGGCGTATGTGGATCCAGAGTATTTTGTCAATGGCAAGTTTACACCAGAATCAGATGTATATTCATTTGGAGTCATATTGTTACAGCTTCTAACTGGAAGACCACTTTTGGGGTTAGTTAGGGATATGAAGTGTGCATTGGAAAAGGAAAACCTTAAAGCAGTCTTGGACCTTTCAGCTGGTGAATGGCCACTTTATCAAACTGAACTTCTGGCATATTTAGCATTGAGGTGTTGTGAAAAGAGTTGGTTGAACAGGCCAGACCTTGTGTCAGAAATTTGGAGTGTTCTTGAACCATTCAAAGCTACTCGCATTGACAAACCATGTTTGATTTCTAAGAAGCTTCATCGTGTTCCTTCACATTTTGTCTGCCCCATTGTCCAGGAAGTAATGGAAGATCCATACATAGCTGCAGATGGCTTTACGTATGAAGCAGAGGCAATAAGAGGGTGGTTGAATAGTGGCCACGACACTTCCCCCATGACAAACCTCAAGCTTGATCACACGGATTTAGTACCTAACTATGCTCTACATAATGCAATTCTGGAGTGGCAGCAACAGTAA 2208 0.4149 MGSIVAEDADTDTVYVAVGKNAEKTHQLLHWTVKNFSGKNVCLLHIHRPYSLNSFSCGTDRNLSGYEPKELTVQAFQDQGNQAVHELLDQYILTLVLAGVRACKLLIEMDDIEKGITKAIAQHSIRWLVVGAAADEYNMGKLAKQDSEKANFIREQALLSCNIWFICKGNLICTRVYSKHTSDIESGPALLVLNSNTEKTKSELNPDALKYLDSDDMKEIQSISSHRSLNTKWSFNKVMDRSKLADLMFHEDEAFESQCATEIRRRKEVEEQLARSKQEVQKMKSQQDEIFQELQMVKDQSSALMNQISESQCTATEFEEKIISAVDLLISFREKRDRLRIEHANAVREVQVLRKFGEADTSFSYQVEFPAFSFLEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGRESLSEFQNQVEVLSRVRHPNLLILIGSCAESRSLVYEYLNNGSLESHLARKEKNPLPWQIRISIATDICSALIFIHSSKLCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQQSLHSADARTICNNPNERLAYVDPEYFVNGKFTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLKAVLDLSAGEWPLYQTELLAYLALRCCEKSWLNRPDLVSEIWSVLEPFKATRIDKPCLISKKLHRVPSHFVCPIVQEVMEDPYIAADGFTYEAEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02462 735 SUPERFAMILY RING/U-box 663 735 - -
Phco6g02462 735 ProSitePatterns Protein kinases ATP-binding region signature. 390 411 IPR017441 GO:0005524
Phco6g02462 735 PANTHER OS02G0152300 PROTEIN 14 731 - -
Phco6g02462 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 735 IPR013083 -
Phco6g02462 735 Coils Coil 259 293 - -
Phco6g02462 735 ProSiteProfiles U-box domain profile. 665 735 IPR003613 GO:0004842|GO:0016567
Phco6g02462 735 SMART Ubox_2 669 732 IPR003613 GO:0004842|GO:0016567
Phco6g02462 735 SUPERFAMILY Protein kinase-like (PK-like) 360 644 IPR011009 -
Phco6g02462 735 CDD RING-Ubox_WDSUB1-like 667 722 - -
Phco6g02462 735 ProSiteProfiles Protein kinase domain profile. 384 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02462 735 Pfam U-box domain 666 734 IPR003613 GO:0004842|GO:0016567
Phco6g02462 735 Gene3D Phosphorylase Kinase; domain 1 357 456 - -
Phco6g02462 735 Gene3D Transferase(Phosphotransferase) domain 1 458 655 - -
Phco6g02462 735 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02462 Phco-Chr6 46018177 46027094 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco6g02462 PK_Tyr_Ser-Thr 7.7e-37 CL0016