Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02447 ATGTCGTCGCCGGGGTTCCCTGCTGCTGGACCCTCCGATTTGTACGGCGGAGCAACAGGATTCCCCACTCAATCCATGGCAGTTCAACCCACCATCAACAACCACCCCGCCACCACTCACCACCCACTCTACCGATCCCAACCTTCAATTTTGTTTCAGCCCTCCTCCCACATAGCCCAACACCAAACATCCTCTCTCATCGGGAAACGCACCCTCGCGGAATTCCAGACCCACAACCTCTCTAACACCTCTAACAATAACAGCAACCTTCTTATTAGCAACAACAATAACCAACTCCTTCCCAACTATCAACTTCGTTCCGTAAAGCCCAGAACTTTTCAACACAACCAATTCTCCACCTTCTCGCCTCAATTGTCTGCCTTTCCGTCACAACGTTACGGCGCCTCCCTTCTCCACCACATTCGCCCTAACGCCGTTAACGCACCACCAGTCACGAGTTCGATCCTGTCTCACACGAATTTCCCTAGGCTAATCGCCAACCCCGAACCGGATAAGAACTCCATAGACCACCGCCTCCAGGAGTTGGAAAAGCAGCTTCTAGAAGACAATGATGACGACCAAGGCGACGCCGTTTCAGTCGTTACCACCTCTGAATGGTCGGACACAATACAGAACTTAATCACTCCGCCCAAACGCGCGTCGTCATCGCCCACTTCCTCTACGACGTCGTCCAACTCCTCCGCTGAATCCATCAGTGCCAAACAGTCCCTAACGGAGGTCGCGAAAGCGATTTCAGAAGGGAGATTCGACGTCGCGACCCAGATCTTAACCCGATTATCGCAGAGTTCGGATCAACGCTTCGTAAATTGCATGGTTTCCGCGCTCAAGTCGCGGATGGGTCACGTTGAGTATCCACCGCCGGTTGCGGAATTGTTTAGCAGGGAACACGCCGAGTCCACTCAGTTGCTATTTGAACACTCGCTCTTCTTTAGGTTCGCGCTCATGGTGACCAACATCGCAATCCTCGAATCCGCATTCGACGATAAATCAGAGAACGCCAAACTCTGCGTGGTGGATTTCGACATCGGGAACGGTAAACAGTACGCGAACCTTCTCCACGAGTTCTCCTTGCGGAGGAAGGGGGGCCCTGCCGTCGTCAAGATCATCGCCGTGGCGGAGAACGGTGCCGACGAGAGGACGAGTACCGCGGGCGTGATGCTGGGAAGAATCGCAAAGCAACTCGGGATTAGTTTTGAATTCCAAGTGCTGACTCGGAGATTATCCGAGTTGACTCGTGAGTCGCTTGGTTGCGACGCGGATGCGGCGCTGGCGGTGAACTTCGCGTTCAGGCTTTACAGAATGCCTGACGAGAGCGTCTCCACGGAGAACCCGCGCGACGACCTTCTGAGGCGCGTCAAAGCACTCGCGCCGCGCGTGGTGACGCTGGTGGAGCAAGAGGCGAACACCAATACCGCGCCCTTCGTGGCTCGCGTGGCTGAGTCGTGTGCTTATTACGGCGCGCTGTTTGACTCGCTGGAGACGACGATGACACGGGAGAACTCGGGACGAATGAAGATCGAGGAAGGACTGAGTCGGAAGATAGCGAACACGGTGGCGTGCGAAGGAAGGGACCGCGTTGAAAGGTGCGAGGTGTTCGGAAAGTGGCGCGCGCGCATGGGCATGGCTGGGTTCAGGTTGAAACCACTGAGTCAGAGAGTGGCTGAGTCAATAAAAGAGCGACTGGGTGGTGAGAAGCGAGTCGAGGTAAAAGTAGAAAATGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTCACTGTGGCATCTGCTTGGTGTTAA 1800 0.5489 MSSPGFPAAGPSDLYGGATGFPTQSMAVQPTINNHPATTHHPLYRSQPSILFQPSSHIAQHQTSSLIGKRTLAEFQTHNLSNTSNNNSNLLISNNNNQLLPNYQLRSVKPRTFQHNQFSTFSPQLSAFPSQRYGASLLHHIRPNAVNAPPVTSSILSHTNFPRLIANPEPDKNSIDHRLQELEKQLLEDNDDDQGDAVSVVTTSEWSDTIQNLITPPKRASSSPTSSTTSSNSSAESISAKQSLTEVAKAISEGRFDVATQILTRLSQSSDQRFVNCMVSALKSRMGHVEYPPPVAELFSREHAESTQLLFEHSLFFRFALMVTNIAILESAFDDKSENAKLCVVDFDIGNGKQYANLLHEFSLRRKGGPAVVKIIAVAENGADERTSTAGVMLGRIAKQLGISFEFQVLTRRLSELTRESLGCDADAALAVNFAFRLYRMPDESVSTENPRDDLLRRVKALAPRVVTLVEQEANTNTAPFVARVAESCAYYGALFDSLETTMTRENSGRMKIEEGLSRKIANTVACEGRDRVERCEVFGKWRARMGMAGFRLKPLSQRVAESIKERLGGEKRVEVKVENGGICFGWMGRTLTVASAWC 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02447 599 Pfam GRAS domain family 241 598 IPR005202 -
Phco6g02447 599 Coils Coil 172 192 - -
Phco6g02447 599 MobiDBLite consensus disorder prediction 1 38 - -
Phco6g02447 599 ProSiteProfiles GRAS family profile. 231 599 IPR005202 -
Phco6g02447 599 MobiDBLite consensus disorder prediction 211 239 - -
Phco6g02447 599 MobiDBLite consensus disorder prediction 18 38 - -
Phco6g02447 599 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 218 592 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02447 Phco-Chr6 45882992 45884791 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco6g02447 GRAS 6.8e-90 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02447 6 45882992 45884791 Phco6g02447 6 45882992 45884791 ECH
Phco5g00740 5 8279136 8281076 Phco6g02447 6 45882992 45884791 PCT