Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02443 ATGCGCAACGGTCACAGCTATGTTCCACTACAGTTCTGTACACACATCACACTTCCCTTTTGCATCCTCCAACTAGAAACTACTCATGGCATGAGTTTTCCTCACCCTGACACTCTTCAAGGAATCCAAAGGCCAAAATCAAACCCCTCTTCAATGAACACCGTATTCCTCATACCCTTTATCCTTCTCCTTCTCACACCCTTCTCAGTTTCATTCTCTCCCACGGATAACTTCCTTCTCAGTTGTGGATCACACAACAATGCTTCCCTCTTCAGCAGAATCTTCACGGGCGATTCCACCAATTCAGGTTCCAATTTTCTCTCTTCAGATCATTCTGTTTCACTCGCATATCAAAAGCCACCTCCGAATTTGCCCACTTTGTACCACACAGCAAGAGTTTTCAGCAGCACTGGGGGCTACAGGTTCAACATGAAGAAAAACGGCACCCACTTTGTGCGTTTTCACTTCTCCCCCTTCAAGGCTCAAAGTTTTGATCTAAAATCAGCAAAATTTAGTGTAATTGTTAATGGGGTTTCGGTGCTGAGCAATTTCCAGCCACCTAATGATATGCTTCTCAAAGAGTTTATTCTAAACATAGAGTCAAACTTTCTTGAGATTTTGTTTAGGCCTGTTGGTGACTCAGATTTTGCCTTTGTCAATGCTTTGGAGGTGTTTACTGCCCCTGTGGATTTTGTTATCGATTTTGGAGCCAGGTTGGCTGGTCCTTCTGGGGTGGAAGAGTACAGAAACCTTTCATCTCAGGTTTTGGAAACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCTTTCAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTGTTCAAGGGTGAAGCAAAGCCTGCAGTGACCACCCACATACCAAATTACCAGAAGGGAGGTGCAACTAGAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCATCTAGGTTCAACATAACCTGGAACTTCCCTGTGTCTACTGGTGGTGTTCCACACTTGGTTCGGTTGCATTTCTGTGATATTGTCAGTCCTGCTCTCAACTTGCTCTACTTTGATGTGTACATCAATGGGTACATTGCCTACAAGGATCTTGATTTGTCAGCGCTTGCCATTAACAGGCTTGCATCACCTGTCTATGTGGATTTTGTTACAAATTCAGATGTCTCTGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGAGCTAAGCAGTTCCATAAGGAGGAATGCCATATTGAATGGTGCAGAGATAATGGAGATGGTCAATGATGTCAGTACTAATGTTGTGCATAGGAGGAAGAATTTGTGGGTGTTGGTGGGTTCAGTTGTTGGAGGAATGGTCGTCTTATTTTTAGTTGTAGCTGCTTTTCTGCTTGGTACCAAATGCAGGAACAAAAAACCAAAACAAAGGACAGTAGAAAGTGTTGGATGGACACCTTTAAGCATGTTTGGAGGGAGTTCCCTTAGTAGAAGCTCTGATCCTGGTTCTCATGGACTTCTTGGCTTGAAGATCCCTTTTGCTGAAATACAATCAGCAACAAACAACTTCAATAGAAATTTGATTATAGGGTCTGGTGGGTTTGGTATGGTCTACAAAGGAGTGTTCAGAGACAATATGAAGGTTGCTGTCAAGAGAGGCATGCCAGGGTCCAGACAAGGTCTTCCCGAGTTCCAAACTGAGATAACAGTTCTGTCCAAAATTCGCCATCGCCACCTTGTTTCACTAGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTGGTCTATGAGTATGTTGAAAAGGGTCCGCTGAAGAAGCATTTGTATGGCTCATCACGACAACCACCTCTCTCTTGGAAGCAGCGTCTTGAAGTATGCATTGGTGCGGCCAGAGGTCTTCACTATCTTCACACTGGCTTTGCTCAAGGAATCATCCATCGTGACATTAAATCAACCAACATATTACTTGATGAAGACTATGTGGCCAAAGTTGCTGACTTTGGTCTTTCAAGGTCGGGACCATGCATCAATGAAACACATGTGAGTACTAATGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTACCGGAGACAGCAGCTTACCGATAAGTCAGATGTTTATTCATTTGGTGTTGTGCTTTTTGAGGTTCTTTGTGGCAGACCTGCTGTTGATCCACAATTAGCAAGAGAACAGGTGAATTTAGCAGAATGGGCACTTGAATGGCTGAAGAAAGGCATGCTGGACAAAATTGTTGACCCCCATCTTGTTGGACAGATCCAACAAGACTCCTTAAACAAATTTTGTGAAACTGCAGAGAAATGTTTGTCTGAGTATGGAGTTGATAGACCAGCTATGGGTGATGTCTTATGGAATTTGGAGTATGCACTTCAGCTCCAAGAAAGTGGACAACAAAGGGAACCACATGCCAACAGCAGTGCTAGTGAAGCTGCGAGTGTGAGCAGTACAGTTATTCCTGGAAATCCTTCTACCAACACAAGAGCGGAGAGGGATTATGATAATTTTTCTTCAGATGTTAGTACTAGCCAAGTGTTTTCCCAGCTAATGAACAATGAAGATAGCTTAATCACTGACTCTTCCAACAAAATCAAGATGTTCGCCAAGCAATATGATGTTGATGTCCGAAACCCATTTATTGTTATCGTTTTTGGCTTTGGAAGCGAATCTAGAGAAGAGGTTGGAAAAGGAGAGTGTGTATGTAGAGCAGGCGTGGGTGGCGAAGTGAAGGACATAGTGGAGAGATAG 2802 0.4304 MRNGHSYVPLQFCTHITLPFCILQLETTHGMSFPHPDTLQGIQRPKSNPSSMNTVFLIPFILLLLTPFSVSFSPTDNFLLSCGSHNNASLFSRIFTGDSTNSGSNFLSSDHSVSLAYQKPPPNLPTLYHTARVFSSTGGYRFNMKKNGTHFVRFHFSPFKAQSFDLKSAKFSVIVNGVSVLSNFQPPNDMLLKEFILNIESNFLEILFRPVGDSDFAFVNALEVFTAPVDFVIDFGARLAGPSGVEEYRNLSSQVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKGEAKPAVTTHIPNYQKGGATREIAPENVYMTAQQMNRENSSLASRFNITWNFPVSTGGVPHLVRLHFCDIVSPALNLLYFDVYINGYIAYKDLDLSALAINRLASPVYVDFVTNSDVSGFVQVSVGPSELSSSIRRNAILNGAEIMEMVNDVSTNVVHRRKNLWVLVGSVVGGMVVLFLVVAAFLLGTKCRNKKPKQRTVESVGWTPLSMFGGSSLSRSSDPGSHGLLGLKIPFAEIQSATNNFNRNLIIGSGGFGMVYKGVFRDNMKVAVKRGMPGSRQGLPEFQTEITVLSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKKHLYGSSRQPPLSWKQRLEVCIGAARGLHYLHTGFAQGIIHRDIKSTNILLDEDYVAKVADFGLSRSGPCINETHVSTNVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWALEWLKKGMLDKIVDPHLVGQIQQDSLNKFCETAEKCLSEYGVDRPAMGDVLWNLEYALQLQESGQQREPHANSSASEAASVSSTVIPGNPSTNTRAERDYDNFSSDVSTSQVFSQLMNNEDSLITDSSNKIKMFAKQYDVDVRNPFIVIVFGFGSESREEVGKGECVCRAGVGGEVKDIVER 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02443 933 Gene3D Transferase(Phosphotransferase) domain 1 610 832 - -
Phco6g02443 933 CDD STKc_IRAK 540 806 - -
Phco6g02443 933 FunFam Receptor-like protein kinase FERONIA 255 440 - -
Phco6g02443 933 FunFam receptor-like protein kinase FERONIA 503 609 - -
Phco6g02443 933 ProSiteProfiles Protein kinase domain profile. 534 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02443 933 SMART serkin_6 534 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02443 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Phco6g02443 933 Pfam Protein tyrosine and serine/threonine kinase 539 733 IPR001245 GO:0004672|GO:0006468
Phco6g02443 933 SUPERFAMILY Protein kinase-like (PK-like) 522 803 IPR011009 -
Phco6g02443 933 PANTHER OS07G0166700 PROTEIN 521 812 IPR045272 GO:0004714|GO:0006468
Phco6g02443 933 ProSitePatterns Protein kinases ATP-binding region signature. 540 562 IPR017441 GO:0005524
Phco6g02443 933 FunFam Receptor-like protein kinase FERONIA 610 826 - -
Phco6g02443 933 Gene3D Phosphorylase Kinase; domain 1 510 609 - -
Phco6g02443 933 Pfam Malectin-like domain 80 437 IPR024788 -
Phco6g02443 933 Gene3D - 255 440 - -
Phco6g02443 933 Gene3D - 77 230 - -
Phco6g02443 933 MobiDBLite consensus disorder prediction 814 852 - -
Phco6g02443 933 FunFam Putative receptor-like protein kinase 77 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02443 Phco-Chr6 45834941 45843027 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Phco6g02443 Malectin_like 7.6e-32 CL0202