Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02437 ATGGTATCTAAAAACTCCAACCCCTCTGAGGCTTTCTACATGGACCCTTCTTCTATGTCGCTCCTCCCTTTTGCCACAGCTGTCAGCGCCGCCGATTCCCTTGAGAACTCTGCTAAGAAGACTCGCAAACCTTACACTATCACCAAGTCTAGGGAGAGTTGGACTGAAGCGGAGCACGACAAGTTCCTGGAAGCTCTGCAGTTATTTGACCGTGACTGGAAAAAGATAGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATACGTAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAATGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATATCCTCAGAAAGCTTCAAAAAATGTTCCAGTGCTCTCACAAGTGTCAGGATCTTTTCAGTCTTCATCGGCTTTGCTTGAACCAGGATACATAATAAAGCATGATTCTTCAGCAATGCTTAAAACTCCTATTATTAACACTGCAGCGTCTTCCTGGTCAAACAACTCTCGGCAGAAAACCACCAATTTATTGCATGGGCACAAAGTGAATAATTGTTGCAGTAACAGTGAAAGTCCAAGAGCACAGTTGGTTGGTGAGTCTAATGGTCAAGGAAATAATATCCATCCATTGAAAGTTCTTCCAGATTTTGCTGAAGTATACGGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATCTACAGAAACTAAAACGGATGGACCCTATAGATGTTGAGACGGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGCAAGCCCAGAGTTTGAGGACCATAGAAGGCTGCTCGCATCATATGTGGTGGAACCTGAGTCAGATAAGTATTATAACAATGCAGATCGAAACATGCTTGATTTGCAGTTAAAGAGTGTTACATAG 927 0.4229 MVSKNSNPSEAFYMDPSSMSLLPFATAVSAADSLENSAKKTRKPYTITKSRESWTEAEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNVPVLSQVSGSFQSSSALLEPGYIIKHDSSAMLKTPIINTAASSWSNNSRQKTTNLLHGHKVNNCCSNSESPRAQLVGESNGQGNNIHPLKVLPDFAEVYGFIGSVFDPNVTGHLQKLKRMDPIDVETVLLLMRNLSINLASPEFEDHRRLLASYVVEPESDKYYNNADRNMLDLQLKSVT 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02437 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 100 IPR017930 -
Phco6g02437 308 CDD SANT 53 96 IPR001005 -
Phco6g02437 308 SMART sant 50 98 IPR001005 -
Phco6g02437 308 Pfam Myb-like DNA-binding domain 51 96 IPR001005 -
Phco6g02437 308 FunFam protein REVEILLE 6 isoform X1 53 101 - -
Phco6g02437 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 98 IPR006447 GO:0003677
Phco6g02437 308 MobiDBLite consensus disorder prediction 101 125 - -
Phco6g02437 308 Gene3D - 54 101 - -
Phco6g02437 308 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Phco6g02437 308 ProSiteProfiles SANT domain profile. 49 102 IPR017884 -
Phco6g02437 308 PANTHER SWI/SNF COMPLEX-RELATED 34 268 - -
Phco6g02437 308 ProSiteProfiles Myb-like domain profile. 46 96 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02437 Phco-Chr6 45804677 45808976 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco6g02437 Myb_DNA-binding 9.6e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00770 5 8802001 8809814 Phco6g02437 6 45804677 45808976 ECH
Phco6g02437 6 45804677 45808976 Phco6g02437 6 45804677 45808976 ECH
Phco5g00770 5 8802001 8809814 Phco6g02437 6 45804677 45808976 PCT