Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02432 ATGGATCAGGACTGGGATCTCTTTGCCATCGTCCGAAGCTGCCAATCTCCTACCAATACTTCCACCACACCAATTCCACAAACCACCACCAATACTACTTCCTCTTCTCTCCTCACTTCCATTGTCAAGGAAAACAAATATGATGCATTTTCTTTTCCCAATACAGTGGAACCCATCACCAATGACTTTCATCAGCTACACCAATTCCTTTCACCCTTTAACCCCACCACCACCAACACCACTACCCTTAGTGCTCCTCGCATCAATCCTAATTCCCCTTATTTTGCACAACAAGAAACCCGGCAAATTAGTGACCACCTTCGCATTTCGCCTCATTTTCTGCCAGAACCCTCCACTCCCAGTTTCAATAGATTCCCTCACCATCAACAACAGCAACAGAATCAACTACAGCTACTTCACAAACACCAATTTCGTCCACCCCACAACAATTCTCCCACAGTTTCACCAAACACACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAACCAACAGAAGAAAATGGTGTGCCAGGTAACCGCAGATAACCTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGGCAGAAACCAATTAAGGGTTCTCCGTATCCAAGGAATTACTATAGGTGTAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGAAGCAACACTGAAACCGACATGTTCATCGTTACGTACACCGGAGACCACTCGCATCCCCGGCCAACCCACCGGAACTCGCTCGCCGGAAGCACCCGGAGTAAGAATCCGCCGACGAATCCACCGCCGTTACCCGGGTCACTCTCCTTCCAAGCCGCCCCCTTTTCTTCTTCTTCTTCTTCTCCACCACACTCTCCAACGTCGCCGTCGGAAGATCCACCGGAAACCGGCGATCTTGAACGCGACCCGGACATGGAAACCGACGTGGACGATGACGGTGACATTCGATGA 963 0.4891 MDQDWDLFAIVRSCQSPTNTSTTPIPQTTTNTTSSSLLTSIVKENKYDAFSFPNTVEPITNDFHQLHQFLSPFNPTTTNTTTLSAPRINPNSPYFAQQETRQISDHLRISPHFLPEPSTPSFNRFPHHQQQQQNQLQLLHKHQFRPPHNNSPTVSPNTQPQTPKSRKRKNQQKKMVCQVTADNLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTETDMFIVTYTGDHSHPRPTHRNSLAGSTRSKNPPTNPPPLPGSLSFQAAPFSSSSSSPPHSPTSPSEDPPETGDLERDPDMETDVDDDGDIR 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02432 320 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 301 IPR044810 GO:0003700
Phco6g02432 320 SMART WRKY_cls 185 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g02432 320 MobiDBLite consensus disorder prediction 301 320 - -
Phco6g02432 320 SUPERFAMILY WRKY DNA-binding domain 182 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g02432 320 ProSiteProfiles WRKY domain profile. 180 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g02432 320 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco6g02432 320 MobiDBLite consensus disorder prediction 274 289 - -
Phco6g02432 320 MobiDBLite consensus disorder prediction 110 175 - -
Phco6g02432 320 Gene3D WRKY domain 168 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco6g02432 320 FunFam WRKY transcription factor 22 168 239 - -
Phco6g02432 320 MobiDBLite consensus disorder prediction 122 165 - -
Phco6g02432 320 MobiDBLite consensus disorder prediction 237 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02432 Phco-Chr6 45737197 45738394 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco6g02432 WRKY 3.8e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02626 3 52920082 52921658 Phco6g02432 6 45737197 45738394 ECH
Phco4g00282 4 1800078 1800949 Phco6g02432 6 45737197 45738394 ECH
Phco1g00234 1 1658560 1665173 Phco6g02432 6 45737197 45738394 ECH
Phco6g02432 6 45737197 45738394 Phco6g02432 6 45737197 45738394 ECH