Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02395 ATGCCTTGTTCGTCTCTCCCACCACTTTTCTTCTTCATCTTCTTCGTCTTCCTCCTCCTCCCCTCGGTACTTTCCCTCCCTTTCTTCCCTTCCGACAACCTCACCCTTTACGGTGACGCCTTCTTCTCCCATAAAGCTATCACTCTCACCACCCACCAACCCACCTGCTCCTCCTCCTCCATCGGCAGAGCCTTCTTCATCTACCCCCTCCGTTTTCTTGACCCCCAAACCAACTCCACCGCCTCCTTCTCCTCCCGCTTCTCCTTCTCCATCCTCTCCTCCCCCTCCTGCCCCTCCGGCGACGGCCTCGCCTTCCTCATCGCCTCCTCCACCCATTTCCCCGCCCTCTCCATGGGCCTCCCGCAACCCTCCCCCTCCTCCTCCTCCTTCTTCGCCGTCGAGTTTGACACTACCTTCGACCCCTCCCTCGGCGACATCAACGACAACCACGTAGCCCTCGACGTCAACAGCGCCTCCTCCTTCGCGTCCGTCGACGCGTTGTCCCGCGGCATTGACCTCAAGAGCGGCAAACTCATTACTGCATGGGTGGAGTACCGCCATGCAATCAAGATGGTACGTGTCTGGCTCGCTTATTCCTCCACCAGACCTCCCACTCCCATTCTTGCTTCCAAAATAGACCTCTCTGAGAGACTTGAAGACTTCATGCACGTTGGTTTCACCGCCTCCAATGGGGAGGGGTCAAGTGATTACCTTATTCATCATTGGCAGTTCACGACTTTGGACCATGACTCTCGCTCCATGGACGTGGTCGACGAAGGTGACTGTTTCTTGTGTTACGAAGGGGATTCTACGGGTTTTGGTTATGATTCGAACACGAGGGAGAACGAGAGGAGGAAAAAGATTGCGGAGATGGCTCTTGGGTTGGCAGGGTTGACGGCTTTTGTGGTGTCGGTTATGGCGGCCATGGTTGTGGTGTGTGTTTTCTTGACTAGGAGGAAAGGAGGTGTTAGGAAGAATATGGAGCAAGGGAAAAGTTGTAGGTTTCAGACGAGTAAAGTTCCGACTAGGTTGTCACTCTCGGAGATTAAGTCTGCCACAATGGGGTTCAATCGTGATAGGCTTGTTGGGGAGGGTGCATCTGCCAAGGTTTATAAAGGGTATCTTCCCTTTGGAGGGGATGTGGCAGTGAAGAGATTTGAGAGGGAAAATGATTTGGATTGTTTGCATAACCCTTTTGCCACTGAGTTTGCCACCATGGTGAGTTACTTGCGCCACAAGAATTTGGTTCAGCTTAAAGGGTGGTGCTGTGAGGGAAATGAGTTGGTCCTGGTTTATGAGTTTCTTCCCAATGGGAGCCTCAATAAGGTTCTGCATAGGAACTTCAATTCTTCCATTGTTCTTTCGTGGAGGCAAAGGGAGAATATTGTTCTTGGGGTTGCTGCTGCTCTCACCTACCTTCATGAGGAGTGTGAGAGGCAGATCATTCACAGGGATGTGAAGACCTGCAATATAATGCTTGATGCCGATTTCAATGCGAAACTTGGGGATTTTGGGCTTGCGGAAGTGTATGAGCACAGTTCTAGCACGAGGGAGGCGACTATACCAGCAGGGACAATGGGGTATCTTGCTCCTGAGTATGTTTATTCTGGTGTTCCTACTGTGAAGACTGATGTGTACAGCTTTGGGGTGGTGGTGTTGGAAGTGGCAAGTGGGAGGAAGCCTGTGGAAGATGATGGAACTGTGGTTGTGGATTATGTGTGGAGCTTGTGGGAAAGGAGGAAACTCATTGAGGCTGCTGATCCAAGATTGATGGGGAAATTTGATGCAGTAGATATGGAAAGGATGCTATTGGTGGGACTTCTTTGTGTGCACCCTGATGATGAGAAGAGGCCAAGAGTAAGAGAAGCAGCAAGAATTCTTAAGAAAGAAGCACCACTTCCTCTCTTGCCTCCCACTAAACCAAGGGTGAGAATTAGGCCTATTTGTCCTGATGCTACACCTGAAACACCCTATGTTGTTGGAGATTCTCTTAGCACAGATGAGGCTCCATATTTGACCCCTAGAAGGAAAGCAGATTCTCAGGAAACTGTTTGTCTCAAATGTGGCGATAGAGGCTTTCAAGTTGCATTGGTTTTTTGCTCTGGGTGTAAGGCTTATGCGCTACATAGGTACTGTTTAAAGGGGCCTGTGATTTTTACTGATGCTGTTACATGGTTCTGTGATGATTGTGCAAAACGGCTTAGGATACCTCCTTCACTCGACCAATCTACACCTCTCTCATCTGTAACAAGAAACTATATAAATTTGGAAAAAAATGCAATCCAAGCCGCAAGAGTAGTTACAAATTGCAAAGAGAGAGTGAAGAAATGCAATAAACCGCAAAAAGAGAAGATTAAAAAGAAACATAAAGGAAAAGTTAACTATGAAACGAAGGGTGTACTATCCAGTTCACCTGAGCTTGAGCATCCTCAATGCATTATCAGCAGTGAAGAAGAGTGTGAGGTCGCAAATGAGTGTGGGGCAGCTCCAAGGGATGTAGCTAATTCTGATTTTGGTGTCCAATCTGTTCCATTTTCTCAAGGAGCTACCAATAATGATTCAAGTTGTGTAGAATTACATGATCGTGTTTATGCACAGCCTCTAGTTGATCCAATCTGGAGGGGAAGCATATACTTCTGCAATGAAACTATTGGTACTGTCAGTGGACTTCTTGCTCATGTGTCCGATTTAGCATGCTCCAAAGTTGCACAGGAGACAGGACGTTTCCCAGAAGTTCTTCATGCAGAATTGGTTCCAAAATCTATTGTGTGGCCTGAAAGTTTCAAGAGGAAGGAGCCAACTGATCAGGACATCGCCCTTTTCTTCTTTCCTGACAGTGAAGGAACTGAGAAGGTATTTGATGCGCTGGTTGATGATGTCATTTGCCATGAAAAGGCCATAAGATTTGTGGCTAAAAATACAGAGCTTTTAGTTTTTCCTTCCACCGAGCTTCCAATCGCTTATTGGAGATTTGAAGCTAAATATTATTTGTGGGGTGTCTTCAAAAGAAAGCAAACTTCGGAACAGAGAAATAATGGTGCATGCAGAGATTGA 3054 0.4758 MPCSSLPPLFFFIFFVFLLLPSVLSLPFFPSDNLTLYGDAFFSHKAITLTTHQPTCSSSSIGRAFFIYPLRFLDPQTNSTASFSSRFSFSILSSPSCPSGDGLAFLIASSTHFPALSMGLPQPSPSSSSFFAVEFDTTFDPSLGDINDNHVALDVNSASSFASVDALSRGIDLKSGKLITAWVEYRHAIKMVRVWLAYSSTRPPTPILASKIDLSERLEDFMHVGFTASNGEGSSDYLIHHWQFTTLDHDSRSMDVVDEGDCFLCYEGDSTGFGYDSNTRENERRKKIAEMALGLAGLTAFVVSVMAAMVVVCVFLTRRKGGVRKNMEQGKSCRFQTSKVPTRLSLSEIKSATMGFNRDRLVGEGASAKVYKGYLPFGGDVAVKRFERENDLDCLHNPFATEFATMVSYLRHKNLVQLKGWCCEGNELVLVYEFLPNGSLNKVLHRNFNSSIVLSWRQRENIVLGVAAALTYLHEECERQIIHRDVKTCNIMLDADFNAKLGDFGLAEVYEHSSSTREATIPAGTMGYLAPEYVYSGVPTVKTDVYSFGVVVLEVASGRKPVEDDGTVVVDYVWSLWERRKLIEAADPRLMGKFDAVDMERMLLVGLLCVHPDDEKRPRVREAARILKKEAPLPLLPPTKPRVRIRPICPDATPETPYVVGDSLSTDEAPYLTPRRKADSQETVCLKCGDRGFQVALVFCSGCKAYALHRYCLKGPVIFTDAVTWFCDDCAKRLRIPPSLDQSTPLSSVTRNYINLEKNAIQAARVVTNCKERVKKCNKPQKEKIKKKHKGKVNYETKGVLSSSPELEHPQCIISSEEECEVANECGAAPRDVANSDFGVQSVPFSQGATNNDSSCVELHDRVYAQPLVDPIWRGSIYFCNETIGTVSGLLAHVSDLACSKVAQETGRFPEVLHAELVPKSIVWPESFKRKEPTDQDIALFFFPDSEGTEKVFDALVDDVICHEKAIRFVAKNTELLVFPSTELPIAYWRFEAKYYLWGVFKRKQTSEQRNNGACRD 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02395 1017 SMART serkin_6 356 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02395 1017 Pfam Protein kinase domain 357 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02395 1017 CDD STKc_IRAK 362 629 - -
Phco6g02395 1017 Gene3D Phosphorylase Kinase; domain 1 319 434 - -
Phco6g02395 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Phco6g02395 1017 SUPERFAMILY Concanavalin A-like lectins/glucanases 28 246 IPR013320 -
Phco6g02395 1017 Pfam Legume lectin domain 30 250 IPR001220 GO:0030246
Phco6g02395 1017 SUPERFAMILY Protein kinase-like (PK-like) 341 648 IPR011009 -
Phco6g02395 1017 SMART PHD_3 684 731 IPR001965 -
Phco6g02395 1017 ProSiteProfiles Protein kinase domain profile. 356 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02395 1017 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Phco6g02395 1017 FunFam L-type lectin-domain containing receptor kinase S.6 323 434 - -
Phco6g02395 1017 CDD lectin_legume_LecRK_Arcelin_ConA 31 246 IPR001220 GO:0030246
Phco6g02395 1017 Gene3D Transferase(Phosphotransferase) domain 1 435 632 - -
Phco6g02395 1017 FunFam L-type lectin-domain containing receptor kinase VIII.1 435 645 - -
Phco6g02395 1017 SUPERFAMILY FYVE/PHD zinc finger 679 735 IPR011011 -
Phco6g02395 1017 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 735 IPR013083 -
Phco6g02395 1017 PANTHER - 47 638 - -
Phco6g02395 1017 Gene3D - 24 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02395 Phco-Chr6 45277753 45284054 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Phco6g02395 Pkinase 1.7e-42 CL0016