Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02389 ATGGATTTGGTAGAAGGCGTCGGGGAGAGCTCCTCGCCGCCGCGCGCCTTCAGCGGATATGGAAACTACGACGTACGCAACGACGTCTACAATCGCCTCCTCGAAACCGGCCACGACCAAGCCGTTTCCAATCCTGAGTTCCGCGAACAGTTGGAGGCTCACTTCAATCGGTTGCCTCCGAGTTATGGACTCGATGTGAATATCGATAAAGCGGAAGATGTTCTGTTGCATCAAACGCTTCTTGCTCTGGCGAGGGACCCTGACAAGCGTCCTGTTTACCATATACGCTTCCTCGAGAATATTTCAACTAGAGCAGATGGTGAAGATCAACAAATTTTAAGTACTCATTATAGGACGGGGTTATCTCATTCTCATGCAACAAATGGGGTAGCAGTACTATCTGGGAAAAGTACGATGAGGGATATTGCAAATGAGTTTGAGCCTTGCTCAAAGCTTGAGGACTTAAATTTGGATGTTAGAAAGAACTCCAAGGAGACAGAGGAGAAATTTCTTGCTGACAACTTTTTTCCGAGGCATGAACATTCAAGTATCCGAGTTCATGAAATAATATTTTCTACTGTTGACAAGCCAAAGCTGTTAAGCCAGTTGTCAGCTCTGCTGTCGGATATTGGACTTAACATCCGTGAAGCACATGTCTTCTCCACAACTGATGGCTATTCCCTTGATGTGTTTGTGGTGGATGGGTGGCCAGTAGAGGAAACAGATGAATTGTATGATGCTATGGAAAAAGCTGTAGCAAGAAGTGAGGGGTCATGGTCCCGTTCTTCAAATTCTCATTCAGCTGTTGAGAAAGCCTTAGCAACAGAGGGAAAATTGGGAGATTGGGAAATAGACAGGAGGTTGCTAAAGTTAGGAGAAAAAATAGCGTCTGGATCCTCTGGAGATTTGTATCGTGGAGTTTATCTTGGGGAAGATGTTGCCGTTAAGGTTCTGAGATCTGAGCAATTGAATGATGCTTTACAGGATGAATTTGCTCAAGAAGTGGCAATTCTGAGGCAGGTACAACATAAAAATGTTGTTCGTTTCATTGGTGCATGTACAAAGTGTCCACATTTGTGCATAGTGACAGAGTATATGCCCGGAGGAAGTCTGTATGATTACATGCACAAAAATCATAATGTCTTGGAGCTATCTCAATTACTAAAATTTGCAATTGATGTCTGCAAAGGTATGGAGTATTTGCACACAAACAACATAATTCACAGAGATCTGAAGACGGCTAATTTGTTGATGGATACACACAATGTTGTTAAAGTCGCAGATTTTGGAGTTGCTCGGTTCCTAAATCAGGGGGGAGTGATGACAGCAGAAACTGGAACATATAGATGGATGGCACCGGAGGTTATAAACCATCAGCCCTATGATCAGAAAGCAGATGTATTCAGTTTTTCCATTGTGCTGTGGGAATTAGTGACCGGAAAGGTACCATATGACACCATGACTCCGCTACAAGCTGCTTTGGGTGTGAGACAGGGTCTGCGGCCAGAGCTTCCGAAGCATGGACACTTTAAACTAATAGAGTTGATGCAAAGATGTTGGGAAGCCATTCCAATCGACCGTCCATCCTTTAATGAGATAACGGTTGAACTTGAAAATCTTTTGCAAGAAATGGAGAAAGATTCAGAAGCGAATGGTGCCTGA 1662 0.4386 MDLVEGVGESSSPPRAFSGYGNYDVRNDVYNRLLETGHDQAVSNPEFREQLEAHFNRLPPSYGLDVNIDKAEDVLLHQTLLALARDPDKRPVYHIRFLENISTRADGEDQQILSTHYRTGLSHSHATNGVAVLSGKSTMRDIANEFEPCSKLEDLNLDVRKNSKETEEKFLADNFFPRHEHSSIRVHEIIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTTDGYSLDVFVVDGWPVEETDELYDAMEKAVARSEGSWSRSSNSHSAVEKALATEGKLGDWEIDRRLLKLGEKIASGSSGDLYRGVYLGEDVAVKVLRSEQLNDALQDEFAQEVAILRQVQHKNVVRFIGACTKCPHLCIVTEYMPGGSLYDYMHKNHNVLELSQLLKFAIDVCKGMEYLHTNNIIHRDLKTANLLMDTHNVVKVADFGVARFLNQGGVMTAETGTYRWMAPEVINHQPYDQKADVFSFSIVLWELVTGKVPYDTMTPLQAALGVRQGLRPELPKHGHFKLIELMQRCWEAIPIDRPSFNEITVELENLLQEMEKDSEANGA 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02389 553 ProSiteProfiles ACT domain profile. 188 262 IPR002912 -
Phco6g02389 553 PRINTS Tyrosine kinase catalytic domain signature 446 456 IPR001245 GO:0004672|GO:0006468
Phco6g02389 553 PRINTS Tyrosine kinase catalytic domain signature 363 376 IPR001245 GO:0004672|GO:0006468
Phco6g02389 553 PRINTS Tyrosine kinase catalytic domain signature 465 487 IPR001245 GO:0004672|GO:0006468
Phco6g02389 553 PRINTS Tyrosine kinase catalytic domain signature 400 418 IPR001245 GO:0004672|GO:0006468
Phco6g02389 553 PRINTS Tyrosine kinase catalytic domain signature 508 530 IPR001245 GO:0004672|GO:0006468
Phco6g02389 553 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 211 545 - -
Phco6g02389 553 SUPERFAMILY Protein kinase-like (PK-like) 274 542 IPR011009 -
Phco6g02389 553 SUPERFAMILY ACT-like 187 256 IPR045865 -
Phco6g02389 553 Pfam Protein tyrosine and serine/threonine kinase 289 536 IPR001245 GO:0004672|GO:0006468
Phco6g02389 553 Coils Coil 530 550 - -
Phco6g02389 553 FunFam Serine/threonine-protein kinase isoform 1 280 367 - -
Phco6g02389 553 Gene3D Phosphorylase Kinase; domain 1 278 366 - -
Phco6g02389 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 406 418 IPR008271 GO:0004672|GO:0006468
Phco6g02389 553 CDD STKc_MAP3K-like 295 537 - -
Phco6g02389 553 SMART serkin_6 289 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02389 553 ProSiteProfiles Protein kinase domain profile. 289 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02389 553 Gene3D Transferase(Phosphotransferase) domain 1 367 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02389 Phco-Chr6 45137207 45150418 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Phco6g02389 PK_Tyr_Ser-Thr 2.3e-73 CL0016