Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02379 ATGGAAGGGAATTTGCCCCAGGGAGGTATAATTCAAGGTGGAGCTTCTTTTGGTGGCTTTAATTTGCCGGGATCAATTCGGGTTCAGCATCAAGCACAACATCCCCATACCATGCACCAACATCAAAGTCATCCGCGCCAAGGGTCTTCTTTACATTCCACAGTTCATGATGTTTTCCCTCTTACAATGGGAACCCTGCAGAATTGTGACCAAACCATTTCAATGACAGAGTTTAGTAAAGGAGACAGAAGCAAAAACTCAGCGAGTGAGGAAGACGAGCCGAGCTTTACCGAGGATGGTGTTGATTGTCACCATGAAGCTAGTAGAGGTAAGAAAGGATCGCCTTGGCAACGGGTGAAATGGACCGATAAAATGGTAAAACTTCTGATAACTGCTGTTTCTTATATTGGCGAGGATGTAACTGTTGATGGTGGTGGAAGTGGAAGAAGGAAATTTGCAGTGTTACAGAAGAAGGGTAAATGGAAATCTGTTTCCAAGGTCATGGCTGAGAGGGGTTATCATGTTTCACCTCAGCAATGCGAGGACAAATTCAATGATCTCAATAAAAGATATAAAAAGCTTAACGATATGCTAGGGAGAGGCACTTCTTGTGAGGTTGTTGAAGATCCTGCACTGTTGGATGTAATAGATTTTCTTTCTGATAAAGAAAAGGACGATGTTCGAAAAATATTAAGCTCAAAACACTTGTTCTATAAGGAGATGTGTTCTTACCATAATGGTAATAGGTTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTGCAGTTAGCGCTGCGAAATAGGGATGATCATGATAATGATGATATGAGAAGGTCCCATCATGACGATCAGGGTGAAGATGATCCAGATGTGGAAATTGATGATCATGATGACTTTGAAGAGAATTGTGCTTCCCACGGTGATAGTAGAGGAATATATGCACCATTAGGTGGATCTATGAAGAAACCGAAACAAGGCCAAGGTCAAGAAGATTGCAATACTTTTGGTAATTCTTTAAATTGTCAGGACTACAGCAGAAGTTCATATCCCCATGGGCAGATGGTCCAATCTGATGTGAATCAAGGTTTACCTGAAAGCATGAGAGCGGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTTCCTTCAGTTAGAGGAACAAAAGCTACAAATTCAGGTTGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAAAAAAAGGATCGGGAGTTGGAGAAGCTAAGCCTAGAAAATGAAAGATTGAAGCTTGAAAATGAACGTATTGCTTTAGAACTTAAGCGAAAGGAAATGAGCACTGGCTTTAAATAA 1347 0.4143 MEGNLPQGGIIQGGASFGGFNLPGSIRVQHQAQHPHTMHQHQSHPRQGSSLHSTVHDVFPLTMGTLQNCDQTISMTEFSKGDRSKNSASEEDEPSFTEDGVDCHHEASRGKKGSPWQRVKWTDKMVKLLITAVSYIGEDVTVDGGGSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVEDPALLDVIDFLSDKEKDDVRKILSSKHLFYKEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDMRRSHHDDQGEDDPDVEIDDHDDFEENCASHGDSRGIYAPLGGSMKKPKQGQGQEDCNTFGNSLNCQDYSRSSYPHGQMVQSDVNQGLPESMRAAWLQKQWVESRFLQLEEQKLQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERLKLENERIALELKRKEMSTGFK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02379 448 Gene3D - 121 193 - -
Phco6g02379 448 MobiDBLite consensus disorder prediction 83 115 - -
Phco6g02379 448 Coils Coil 380 402 - -
Phco6g02379 448 MobiDBLite consensus disorder prediction 269 287 - -
Phco6g02379 448 MobiDBLite consensus disorder prediction 269 335 - -
Phco6g02379 448 Coils Coil 410 444 - -
Phco6g02379 448 MobiDBLite consensus disorder prediction 30 52 - -
Phco6g02379 448 Pfam Myb/SANT-like DNA-binding domain 118 243 IPR044822 -
Phco6g02379 448 PANTHER F16F4.11 PROTEIN-RELATED 1 445 - -
Phco6g02379 448 FunFam Sequence-specific DNA binding transcription factor 121 193 - -
Phco6g02379 448 MobiDBLite consensus disorder prediction 77 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02379 Phco-Chr6 45043256 45044602 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco6g02379 Myb_DNA-bind_4 1.7e-23 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g00944 5 14246591 14247919 Phco6g02379 6 45043256 45044602 PCT