Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02378 ATGAGGGATGATGCAGAATATCACGGCCATCGAAACTTTGACGCCATTTATTACGGTAGCTGCTGTAATTGCTGCGGTGCTGTTTTGGAAAAGAGGGAGAGAGACCCAAAAGAGACTATGCTTGGGGACTCAGCTGTGTTGGGAGCAGGAGGTGGAGGTGGCGGTGGGGAAGGTGGCGCCTCCGTCGATGCAGTGGCCGGGCTCACGCATGACGGGGCGGTGGTGGCGAGCGGAGGCGGTGGCGGAGTTGGATCAAATTCGGGGGACGACGAAAGGGGTAGAATCGACGAGGGAGAACGTAGCTTCGGTGGTAACCGGTGGCCCCGACAAGAGACTTTGGCGCTGTTAAGGATACGGAAGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACCAAAGAAGGTCGAAGTGGGAAACAAGATGGAAAAACATATCGTTTCTTTGATGAACTACAAGCCCTTGAGAATCACACTCCAACACCCCACTCTCCCAACCCATCACCAAAACCACCACAATCAGCATCCTCAAGAGTAATTGCAACAACAGCTGCATCAGTGTCACCACCGATTGCAACAGGAACAACAACTGCTTCATCATTGTCACTTCCAATTCCAACAACAATAACAACAGTGCCAATGCAGCCAATACTGTCCAACACCACTCTCACTGGTACTGTCCCCCATATCACTGTTCCATCAACAACAACACTGCCTATAACCATACCCCATCCCATTCTTACAACCCCATCAATACATCTCTCAATTCCTTCTTACCCTCCAACAAACCCTACCACCAACACAACCCCACCACCCTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAGAGGAAACGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCGAGAAGCAAGAGGATCTACAAAAGAAGTTCCTGGAAGCCATAGAGAAACGAGAACACGACAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAGGAGATGCAAAGAATCAATAGAGAGAGAGAAATCCTCGCACAAGAAAGATCCATAGCCGCAGCCAAAGACGCCGCCGTCATGTCATTCCTTCAAAAAATAGCCGAACAACAAAACCTCGGTCAAGCATTGAGCAACATCAACCTCGTACAGCAACCACCACACCAACAACCTCAACAGTCACTGCAACAACTACCACCATCTAGTGTAGCGCCACCTCCTGCACAACAACCACTGCCCGCTATTGTTACACAGCCAGTGGTGTTGCCAGTCTTTTCACAAGTGACCAACATGGAGATAGTTAAAGTTGACAACAACAACAATAGTAGTGAGAATTTCACGCCATCGAGTTCTTCAAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATTCAAAGTATCAAGATAACGGACCAAAGGGTCCTCTCTGGGAGGAGATCTCATCCTCAATGAGGAAGCTCGGGTACATCCGAAACGCGAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAGCGGAGACCGGAAGATTCCAAAACGTGCCCTTATTTCCACCAGCTTGACGCGCTGTACAGGGAGAGGAGCAAGGTGGAGGGCGTGGTGGCGGCGGTGAAGCCTGAGAGCACGGTGGCGCCCCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGAATCGATGAGGGATAGGGACATGAGAATGGAGGACGTGGAGAATGAAGAGGATGAGTACGAGGAAGAGAGAGAGGGTGAGGGAGAGGAAGAAGAAGATGATGAAGAGGATGAAGAAGGTGGTGGTGGTGGTGGGAAATATGAGATAGTGGCGAACAAAACAAGTGGTGGTTCAGTTGGGGCATCAACAGAATAG 2070 0.5014 MRDDAEYHGHRNFDAIYYGSCCNCCGAVLEKRERDPKETMLGDSAVLGAGGGGGGGEGGASVDAVAGLTHDGAVVASGGGGGVGSNSGDDERGRIDEGERSFGGNRWPRQETLALLRIRKDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDELQALENHTPTPHSPNPSPKPPQSASSRVIATTAASVSPPIATGTTTASSLSLPIPTTITTVPMQPILSNTTLTGTVPHITVPSTTTLPITIPHPILTTPSIHLSIPSYPPTNPTTNTTPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIEKQEDLQKKFLEAIEKREHDRIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQQNLGQALSNINLVQQPPHQQPQQSLQQLPPSSVAPPPAQQPLPAIVTQPVVLPVFSQVTNMEIVKVDNNNNSSENFTPSSSSRWPKVEVQALIKLRTNLDSKYQDNGPKGPLWEEISSSMRKLGYIRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRERSKVEGVVAAVKPESTVAPLMVRPEQQWPPQEESMRDRDMRMEDVENEEDEYEEEREGEGEEEEDDEEDEEGGGGGGKYEIVANKTSGGSVGASTE 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02378 689 MobiDBLite consensus disorder prediction 637 666 - -
Phco6g02378 689 MobiDBLite consensus disorder prediction 299 313 - -
Phco6g02378 689 MobiDBLite consensus disorder prediction 437 462 - -
Phco6g02378 689 ProSiteProfiles Myb-like domain profile. 503 561 IPR001005 -
Phco6g02378 689 MobiDBLite consensus disorder prediction 76 104 - -
Phco6g02378 689 FunFam Trihelix transcription factor GT-2 505 566 - -
Phco6g02378 689 Coils Coil 628 658 - -
Phco6g02378 689 Gene3D - 107 168 - -
Phco6g02378 689 Gene3D - 505 566 - -
Phco6g02378 689 PANTHER FI21293P1 85 641 - -
Phco6g02378 689 MobiDBLite consensus disorder prediction 289 337 - -
Phco6g02378 689 CDD GT1 105 170 - -
Phco6g02378 689 MobiDBLite consensus disorder prediction 314 329 - -
Phco6g02378 689 MobiDBLite consensus disorder prediction 614 689 - -
Phco6g02378 689 CDD GT1 503 568 - -
Phco6g02378 689 ProSiteProfiles Myb-like domain profile. 105 163 IPR001005 -
Phco6g02378 689 MobiDBLite consensus disorder prediction 89 104 - -
Phco6g02378 689 MobiDBLite consensus disorder prediction 193 215 - -
Phco6g02378 689 SMART sant 501 563 IPR001005 -
Phco6g02378 689 SMART sant 103 165 IPR001005 -
Phco6g02378 689 Coils Coil 343 370 - -
Phco6g02378 689 FunFam Trihelix transcription factor GT-2 107 168 - -
Phco6g02378 689 Pfam Myb/SANT-like DNA-binding domain 503 590 IPR044822 -
Phco6g02378 689 Pfam Myb/SANT-like DNA-binding domain 105 191 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02378 Phco-Chr6 45016450 45020777 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco6g02378 Myb_DNA-bind_4 1.1e-20 CL0123