Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02377 ATGCAGCTTGGAGACACCACAGCCATGGAAACCTCCTCCGGAGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAACTTCCGGTGAAGAGAAGGGAAAAGAGGGTGGTTTAGAAGAAGAAGAAGAAGGTGACAAGATCAACAACTCATGCGCTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTATTTCGTGATTCAAGTCTCAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTAGCAGAACTGGGTTACCACCGAAGCTCGAAGAAATGTAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACCAAAGAGAGTAGAAGCGGGAAACAGGAGGGAAAAAACTACAAGTTTTTTGATCAATTACAAGCCCTTGAGAACCAATTCATAGTCTCTTACCCGTTAACACCACAACCCACTTTGGCAACAACAAACACGGTTGCATTATTACCTCCCCCAACAAAGCCTAGTGATACAACCACAATCTCTTATGTCACCACCACTGTTCCCTCCACAAACCCTACAGCAATATCTCCCTTACCACCACCACCACCACCTACCAATGCCACCACCACAACCACCATCACTTCTCCAACAGTACTAACCAACCCTAGAAACCCTCCACAACCCAACAACAATAACCATAACATCTCTTACTCTTTACCTAACATGAATAACCTCTTCTCCACCACTTCAACCTCTTCTTCCACGGCCTCTGATGAAGACTTGGAAGAGAAATACCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACAAGGCAAGTCCTGGCCAAGCAAGAGGAAATGCAAAAGAGGTTCCTGGAAGCCATAGACAAAAGGGAGAGAGAACACGTGGCACAGCAAGACGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCGAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCTGGTCAGAACCAGAACCCCTCAACACAAGCCGGTGCCAATTTCCTTCAACCACCGCCTTCACAACCACCACCTACATCCCAAGTATCACAAGTAAAACCACCACCGCAACATGCTCCACAACCACAAACACCAATGGTGATGGCAAATATTAACAATATTGAAATTCAGAAAATGAGTAATGGTCACAGTGCAGTTGCTGCTACTCCTACAACTGCTGCTACTGCTATCTGCGTTGTTTCTACCACTCCTACTTCATTGAACTCTTTATCTTCTTCTAGGTGGCCAAAAGCTGAGGTTCATGCTTTGATAAGGTTGAGGACGAGTCTTGAAACCAAGTACCAAGAAAATGGACCAAAGGCTCCACTATGGGAGGACATATCAGCAGGAATGTTGAGGATCGGGTACAACAGGAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATCAACAAGTACTTTAAGAAAGTCAAGGAAAGCAACAAGCATAGGCGCGAGAATAGTAAGACATGTCCCTATTTTCATGAACTGGATGCCATATACAAAGAAAAGAGCAAAACTCAGAACCCCTTTGGCGCTTCATTCCTCAACATGAAGCCACATGAGATGATGGAGCCGTTGATGGTGCAACCGGAGCAGCAATGGAGACCTCCTTCCCAATACGAAGAGGGTGCAGTGAAGGAGAACAGTGAAAGTGAGTACGAAAGAAAAGAAAGAGAGGAGGAAGAGGAAGAAGATGATGAAGAAGTAGAAGAGGATGAGAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGTAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACGCAGTTTAA 1899 0.4555 MQLGDTTAMETSSGEAVAAHDGGEVIMMDATSGEEKGKEGGLEEEEEGDKINNSCAGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLAELGYHRSSKKCKEKFENVYKYHKRTKESRSGKQEGKNYKFFDQLQALENQFIVSYPLTPQPTLATTNTVALLPPPTKPSDTTTISYVTTTVPSTNPTAISPLPPPPPPTNATTTTTITSPTVLTNPRNPPQPNNNNHNISYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREHVAQQDAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQNQNPSTQAGANFLQPPPSQPPPTSQVSQVKPPPQHAPQPQTPMVMANINNIEIQKMSNGHSAVAATPTTAATAICVVSTTPTSLNSLSSSRWPKAEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRIGYNRSAKRCKEKWENINKYFKKVKESNKHRRENSKTCPYFHELDAIYKEKSKTQNPFGASFLNMKPHEMMEPLMVQPEQQWRPPSQYEEGAVKENSESEYERKEREEEEEEDDEEVEEDENEEGDLESVEDEGGSRYEIATNKLSSVDAV 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02377 632 MobiDBLite consensus disorder prediction 365 390 - -
Phco6g02377 632 ProSiteProfiles Myb-like domain profile. 435 499 IPR001005 -
Phco6g02377 632 MobiDBLite consensus disorder prediction 194 208 - -
Phco6g02377 632 ProSiteProfiles Myb-like domain profile. 58 116 IPR001005 -
Phco6g02377 632 FunFam Trihelix transcription factor GT-2 60 121 - -
Phco6g02377 632 Gene3D - 60 121 - -
Phco6g02377 632 Gene3D - 443 504 - -
Phco6g02377 632 FunFam Trihelix transcription factor GT-2 443 504 - -
Phco6g02377 632 SMART sant 439 501 IPR001005 -
Phco6g02377 632 SMART sant 56 118 IPR001005 -
Phco6g02377 632 MobiDBLite consensus disorder prediction 209 257 - -
Phco6g02377 632 CDD GT1 58 123 - -
Phco6g02377 632 MobiDBLite consensus disorder prediction 31 52 - -
Phco6g02377 632 MobiDBLite consensus disorder prediction 191 266 - -
Phco6g02377 632 MobiDBLite consensus disorder prediction 352 392 - -
Phco6g02377 632 Pfam Myb/SANT-like DNA-binding domain 441 528 IPR044822 -
Phco6g02377 632 Pfam Myb/SANT-like DNA-binding domain 58 144 IPR044822 -
Phco6g02377 632 Coils Coil 575 605 - -
Phco6g02377 632 PANTHER FI21293P1 32 588 - -
Phco6g02377 632 MobiDBLite consensus disorder prediction 585 611 - -
Phco6g02377 632 MobiDBLite consensus disorder prediction 1 57 - -
Phco6g02377 632 MobiDBLite consensus disorder prediction 560 632 - -
Phco6g02377 632 CDD GT1 441 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02377 Phco-Chr6 44981714 44984413 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco6g02377 Myb_DNA-bind_4 1.9e-21 CL0123