Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02376 ATGTCCTTCCGCAGCATAGTTCGTGATGTAAGGGATGGATTTGGAAGCCTATCAAGGAGGAGCTTTGAGGTAAGGCTTCCTGGCCATAACAGGGGTAAGTCACGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCAGCGGTCATACAGAACAGCCGGTGGGCTAGCCTTCCACCAGAGCTCCTTCGCGATGTTATTAATAGATTGGAAGCAAGTGAGAGTACATGGCCTGGTCGTAAGCATGTGGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTCAGCAGTCCTGAACTCTGTGGGAAGATTACTTTCCCTATCGCCCTGAAGCAGCCTGGGCATAGGAATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCATCTCTACCTTTGCCTCAGTCCTGCCCTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCAGCAAAAAGGACCAGAAGAACAACTTGCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACCTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACAAAGTTTATAATTTATGATACACAACCACCGTACCACAATGCTATGCTGTCCCCACCTGGGCGTAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAACATTGGGCAGGTCACCTATGAGTTGAATGTCCTTGGTACTAGGGGACCTCGAAGGATGAATTGCACAATGTACTCAATTCCTGCATCATCTCTTGAGCCTAATGGCGTTGTCCCAGGGCAGCCAGAGCTCCTTTCCCACCCCTTTGAGGATTCTTTCCGGAGTATATCCTTCTCAAAATCAATTGACAATTCAACCCAGTTTAGCAGCTCTAGGTTCTCAGACATAATGGGAACCGGCAATGAAGACCAGGAGGGAAAGGTGGTACCATTAGTTCTGAAGAACAAGTCCCCAAGGTGGCATGAACAACTTCAGTGTTGGTGCCTCAACTTTAGAGGAAGGGTCACTGTTGCCTCTGTGAAGAATTTTCAGCTGATTGCTGCGACATCTATGACAGCCCCAGCCTCTATAGGATCAGGACCTACACTATCCCACCCAACACAGTCTTCTTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGCTACCATCTGTCTGCATTTCAGGCTTTTGCTATATGCCTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1293 0.4671 MSFRSIVRDVRDGFGSLSRRSFEVRLPGHNRGKSRSSVHELQEQPAVIQNSRWASLPPELLRDVINRLEASESTWPGRKHVVACAAVCKSWREMCKEIVSSPELCGKITFPIALKQPGHRNGTIQCFIKRDKSKLTYHLYLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYHNAMLSPPGRSRRFSKKVSPKVPSGSYNIGQVTYELNVLGTRGPRRMNCTMYSIPASSLEPNGVVPGQPELLSHPFEDSFRSISFSKSIDNSTQFSSSRFSDIMGTGNEDQEGKVVPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSMTAPASIGSGPTLSHPTQSSSDHDKIILQFGKVGKDMFTMDYRYHLSAFQAFAICLTSFDTKLACE 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02376 430 SUPERFAMILY Tubby C-terminal domain-like 102 430 IPR025659 -
Phco6g02376 430 PANTHER TUBBY-RELATED 35 428 - -
Phco6g02376 430 FunFam Tubby-like F-box protein 48 101 - -
Phco6g02376 430 Pfam F-box domain 53 100 IPR001810 GO:0005515
Phco6g02376 430 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Phco6g02376 430 Gene3D Tubby Protein; Chain A 113 424 IPR025659 -
Phco6g02376 430 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Phco6g02376 430 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Phco6g02376 430 PRINTS Tubby superfamily signature 387 406 IPR000007 -
Phco6g02376 430 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Phco6g02376 430 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Phco6g02376 430 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Phco6g02376 430 PRINTS Tubby superfamily signature 408 430 IPR000007 -
Phco6g02376 430 CDD F-box_AtTLP-like 53 97 - -
Phco6g02376 430 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Phco6g02376 430 Gene3D - 48 105 - -
Phco6g02376 430 ProSitePatterns Tub family signature 2. 415 430 IPR018066 -
Phco6g02376 430 FunFam Tubby-like F-box protein 110 430 - -
Phco6g02376 430 Pfam Tub family 114 425 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02376 Phco-Chr6 44956721 44959206 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Phco6g02376 Tub 3.2e-113 CL0395