Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02334 ATGGATCCTTTTACTGAAGAGTTGCCTCAGTACATACATGTAGATCAAAATGAGTTTTTCATGCGAAGGCACAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGTGGGGATAGCTGTTTGAATGTTTTGACCAGCACGGAATGCACCCCTGGTTATTGCCCTTGTGACATCTTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCTAAAACAAAGTTGTTTAAGACTGAAGGCCGTGGATGGGGTCTTTTGGCTGGTGAGGATCTCAAGGCAGGACAATTTGTCATCGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAAATCAAGGCCTTAAAGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATGTTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCATTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAACGGACGAACTGAATCCTCTTTGGATGTTATGCTTAAAGCTGAGCAACTATCTGAGTCCTCTGGTTTTAACGTTCAGTCCCTTGATTCAGTTCAGATGAAAGGTTTAGATGTCAAAAAGATTAAAACTGAAGTAACAGATGAGGATATGCACTTGTACTCCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATTCGAAGTAATGCTGCTGGCAGAAACTATCACATTGGACCTAGGTCTATGTCTACCAAAAGATCAAGGGCATATAATGGCGGAAGGTTTAAAAATCTCGTAGAGAAGAAAATTGATGCAAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTGTGAGAAAAGAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACAGTTGCAGAGAAGTGGATACAGGTTTGCTGTGTAAAATTGAAGGCTGAGTTTGATCTTTACTCGTCAATTGTCAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGGGCAAGCAAAACCTACTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1446 0.4004 MDPFTEELPQYIHVDQNEFFMRRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLAGEDLKAGQFVIEYCGEVISWKEAKRRSQAYENQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDVPIGTELAYDYNFEWFGGAKVRCLCGAFKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESSGFNVQSLDSVQMKGLDVKKIKTEVTDEDMHLYSHDTEQTLSQKNAMISRIRSNAAGRNYHIGPRSMSTKRSRAYNGGRFKNLVEKKIDAKFAAGLLASKEAQEEILNCEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQVCCVKLKAEFDLYSSIVKNVACTAQRAPGQAKPTEVDNENEIKFLTG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02334 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0042054
Phco6g02334 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Phco6g02334 481 SUPERFAMILY SET domain 11 220 IPR046341 -
Phco6g02334 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Phco6g02334 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0042054
Phco6g02334 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0042054
Phco6g02334 481 PANTHER SET DOMAIN PROTEINS 8 464 - -
Phco6g02334 481 Gene3D SET domain 3 235 IPR046341 -
Phco6g02334 481 Coils Coil 381 401 - -
Phco6g02334 481 FunFam Histone-lysine N-methyltransferase 1 235 - -
Phco6g02334 481 SMART set_7 83 206 IPR001214 GO:0005515
Phco6g02334 481 Pfam SET domain 94 200 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02334 Phco-Chr6 44514420 44520946 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Phco6g02334 SET 4.7e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02334 6 44514420 44520946 Phco6g02334 6 44514420 44520946 ECH