Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02333 ATGGACCACGCTTTCCAAGCCATCGTCGCCGCCATAGGCAGCTTCTTCATCGTCACGCTAATCCTTGCCGGAGCCATCATGCTCTGCCAGCAGTACTGCGACTCCTCGAAAGCTCGCACCCGCACCACTCAGAGATCAACCAGACCCGCGCCCGCCCGCGACGCCTCTTTCTCCCTCGCCGTTGTCGACGCCAGCTGGTCCTCCGACCCCAACCTCATCAAGATCACGTGGGAGGAGCTCGCCGTCGCCACCGAAAACTTCTCCCCGCATCTCATCGTCGGCGACGGCAGCTTCGGCCTTGTCTACAAGGCCCGCCTCTCCACCAACGCCCTTGTTGCTGTCAAGAAGCTCTCCCCTGACGCCTTCCAGGGCTTCCGCGAGTTCAGGGCGGAGATGGAAACCCTAAGCAAGCTCAACCACCCAAACATCGTCAGAATCCTCGGGTACTGGGCCTCCGGCCCAGAACGTTTACTCGTCTATGAGTTCATCGAAAAGGGAAACCTCGATCAGTGGCTCCACGAACCCGATCCCTCTCGCACCCCCCTGTCCTGGGAAACTCGCGTCAACATAATCCGCGGCGTGGCCCACGGGCTTTCGTACCTCCACGAGCTGGAGAAGCCCGTCATTCATCGCGACATAAAGGCGAGCAACATCTTGCTGGACTCGAAGTTCCATGCCCACATTGCTGACTTTGGGCTGGCGCGCAGGATCGATAAAACGCACTCCCACGTTTCCACACAGTTCGCGGGCACAATGGGGTACATGCCGCCCGAGTACATTGAAGGGTCGAATGTGGCGAACACGAAGGTGGATGTTTATAGTTTTGGGATTTTGATGATTGAGACCATGTCGAGTCAGCGGCCCAATTTGCCAATGAAATTGGGCGAGAATGACATTGGGATTGTCCAGTGGGCCAAAAAGATGAAGGAGCAAAATGCGGAGATGGATATGGTAGATGTGAATATTTCAAGAGATGGGTTGAGTGAGGAGAGTGTTAGGGAGTATGTACGCATCGCCTGTGAGTGCACCAGTGAGATGCAGAAGGAAAGACCCGAAATGCCACAAGTTCTCCAATGGTTGTCCTCCATCACACCCAATCTTTTTATCTCATCCTAA 1116 0.5556 MDHAFQAIVAAIGSFFIVTLILAGAIMLCQQYCDSSKARTRTTQRSTRPAPARDASFSLAVVDASWSSDPNLIKITWEELAVATENFSPHLIVGDGSFGLVYKARLSTNALVAVKKLSPDAFQGFREFRAEMETLSKLNHPNIVRILGYWASGPERLLVYEFIEKGNLDQWLHEPDPSRTPLSWETRVNIIRGVAHGLSYLHELEKPVIHRDIKASNILLDSKFHAHIADFGLARRIDKTHSHVSTQFAGTMGYMPPEYIEGSNVANTKVDVYSFGILMIETMSSQRPNLPMKLGENDIGIVQWAKKMKEQNAEMDMVDVNISRDGLSEESVREYVRIACECTSEMQKERPEMPQVLQWLSSITPNLFISS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02333 371 CDD STKc_IRAK 93 363 - -
Phco6g02333 371 Gene3D Phosphorylase Kinase; domain 1 55 162 - -
Phco6g02333 371 FunFam Phytosulfokine receptor 2 163 364 - -
Phco6g02333 371 Gene3D Transferase(Phosphotransferase) domain 1 163 365 - -
Phco6g02333 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Phco6g02333 371 ProSiteProfiles Protein kinase domain profile. 87 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02333 371 SUPERFAMILY Protein kinase-like (PK-like) 68 360 IPR011009 -
Phco6g02333 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 363 - -
Phco6g02333 371 Pfam Protein kinase domain 92 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02333 371 FunFam Phytosulfokine receptor 2 46 162 - -
Phco6g02333 371 SMART serkin_6 87 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02333 371 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02333 Phco-Chr6 44510673 44511788 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Phco6g02333 Pkinase 3e-50 CL0016