Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02329 ATGGATATACGAATCTTGGTGGGTGTCCGTACTCTGCAAAGGTTGCCGGCTGTGGGACCCAACAAAAGAATAAAAGATCTAACATCTCTGCCATACACAGACACGTGCGCCCAACACTCACTCACGCCATTGCCTACTGTCACACTCCATATGTCTCTCCATCTTCAAAGTTTCACCCTTTCCTTTCCACTTTCAAAACTCTCTCTCTCTCCTATTCTAAGAACTGCGCAGTCATTTTCTCTCTCTGCGGAAAACCCAAAGAAGAAAACACCCCATTGTTTTTTCCTGCGAGTCAAGAGTGATTTCCCACAGCAACATTCCAAATGTGCCGCCAAGCCATTGGATTCGGAAGGTCCAGACTACAGGAGCCTGGAGAGGTTGAAGTTGGATAATGGGTATGTCGCAAGTTCTGACTTTGTTGCTCATAGGAGATCCACTGGTCAAAGACATGACCCCAATAAGGACAATCACAGGCTGCAACAGCATCAGAGAGAACAACCCATAAAGGATAAACTTAAGTCTGGTGTTGCCAATGATGGCGCTGGGCATCATAAGGGCAGGGTGGTCGGAAGAGAGGGGAGGCGAGTCACGCGTCGTGATGATAAGAAATTGGCAAACAAGTGTTGCTTTGAGGATGAGATGGTAGATGGGTGGCCAAGGTGGTTGGTTGATAATGTTCCTGCACAAGTGTTGGCTGGCTTGGTTCCTAGGAGTGCTGAATCCTACAAAATGATTGATAAGATAGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTGGATCGAGACACAGGAGAAATTGTGGCCATGAAGAAGGTTCGCTTCAATACATCAGAGCCTGAAAGCATAAAGTTTATGGCAAGAGAAATTACGATATTACAGAGACTGGATCATCCCAATGTAGTCAAACTTAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGACTTCATGCAAACAGATTTGGCACGAGTTATTGCTCGTCCTGAAGAGAGACTATCAGAACCACAGGTCAAGTGCTATATGCATCAATTACTTTCAGGTCTGCAGCATTGCCATGACAGGGGAATTCTTCATCGAGATATAAAGGGATCAAACCTTTTGATTGATAAAACTGGGATGCTTAAGATTGCAGATTTTGGACTTGCCAATTTTTATGGTCCAGATCATCATCAGCCTCTCACTAGCCGGGTTGTGACACTATGGTACAGAGCTCCTGAATTGTTGTTAGGTGACACAAACTATGGAGTTGGTGTTGATCTGTGGAGTGCTGGATGTCTCCTGGCAGAAATGTTCAAAGGATTCCCAATCATGCCTGGCAGAACTGAGGTTGAGCAAATTCATAAAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTATAACTTTTAGACCTCCAAAGTCTTATAGACCCAGTCTTGTAGAAACTTTCGGGGATCTCCCTCCATCTTCTTTAGGTCTTCTATGCACTTTGCTTGCTTTGGATCCTGCATTCCGTGGAACTGCATCTAAAGCTCTTAAAAATCAGTTTTTCTTTACGAGCCCATTGGCATGTGACCTCTCTGGTATGCCTGTAATCTTCAGGGAGGATGATGAGCGTGTTCAAGCCAACGAACAGATCAAGTACATGAATTCTAAAATCAGGCGTTCTCGTACATATCTGGAGCGTCGTAAGAATTCAGCATCTAAGAGGCCAATAGAGCATACAGTATCTTCTAAAGAGGAATTGGTAAGGAATGCTAAACCTGAAACTTTTGCTCCAACTGAAGACATGGATAGCACAAGCAGTACCTCATCTAGTGTAAATCCTGGAGGGGCTAAGGACCAATCACCTTTTTTTCTATCTCCATTTGGGGAATTAGATCGAAAGCTATCTCCAAAACCTCACCACCATGCTAATGTTGGTGAAGAAAACATCAAGAACCTTCCTCCATTGCCCAAGTCAAAACCAAATGCTACCAAGAATGATGTCAGTAGATACAGACCAGACCAGTTTTTTAGGTCAGCTTCCACCAGAGAATTTAGATACTTAAAAAGGGAGGAACGTTTACTATTGGAATTTGATGATTAA 2109 0.4324 MDIRILVGVRTLQRLPAVGPNKRIKDLTSLPYTDTCAQHSLTPLPTVTLHMSLHLQSFTLSFPLSKLSLSPILRTAQSFSLSAENPKKKTPHCFFLRVKSDFPQQHSKCAAKPLDSEGPDYRSLERLKLDNGYVASSDFVAHRRSTGQRHDPNKDNHRLQQHQREQPIKDKLKSGVANDGAGHHKGRVVGREGRRVTRRDDKKLANKCCFEDEMVDGWPRWLVDNVPAQVLAGLVPRSAESYKMIDKIGQGTYSNVYKALDRDTGEIVAMKKVRFNTSEPESIKFMAREITILQRLDHPNVVKLKGLATSRMQYSIYLVFDFMQTDLARVIARPEERLSEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKTGMLKIADFGLANFYGPDHHQPLTSRVVTLWYRAPELLLGDTNYGVGVDLWSAGCLLAEMFKGFPIMPGRTEVEQIHKIFRLCGTPSEEYWRKLKLSITFRPPKSYRPSLVETFGDLPPSSLGLLCTLLALDPAFRGTASKALKNQFFFTSPLACDLSGMPVIFREDDERVQANEQIKYMNSKIRRSRTYLERRKNSASKRPIEHTVSSKEELVRNAKPETFAPTEDMDSTSSTSSSVNPGGAKDQSPFFLSPFGELDRKLSPKPHHHANVGEENIKNLPPLPKSKPNATKNDVSRYRPDQFFRSASTREFRYLKREERLLLEFDD 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02329 702 Gene3D Phosphorylase Kinase; domain 1 232 324 - -
Phco6g02329 702 FunFam Putative serine/threonine-protein kinase 325 562 - -
Phco6g02329 702 MobiDBLite consensus disorder prediction 635 649 - -
Phco6g02329 702 MobiDBLite consensus disorder prediction 601 619 - -
Phco6g02329 702 SUPERFAMILY Protein kinase-like (PK-like) 237 528 IPR011009 -
Phco6g02329 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 362 374 IPR008271 GO:0004672|GO:0006468
Phco6g02329 702 PANTHER CELL DIVISION PROTEIN KINASE 240 529 - -
Phco6g02329 702 ProSitePatterns Protein kinases ATP-binding region signature. 248 271 IPR017441 GO:0005524
Phco6g02329 702 ProSiteProfiles Protein kinase domain profile. 242 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02329 702 SMART serkin_6 242 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02329 702 MobiDBLite consensus disorder prediction 143 195 - -
Phco6g02329 702 FunFam probable serine/threonine-protein kinase At1g54610 229 324 - -
Phco6g02329 702 Gene3D Transferase(Phosphotransferase) domain 1 325 574 - -
Phco6g02329 702 MobiDBLite consensus disorder prediction 564 593 - -
Phco6g02329 702 Pfam Protein kinase domain 242 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02329 702 MobiDBLite consensus disorder prediction 564 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02329 Phco-Chr6 44479555 44484459 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Phco6g02329 Pkinase 3.9e-68 CL0016