Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02309 ATGGAAAACATTGTTCCCCGGAGTGTTACCACTTTGTTATTTTCCATGATATTTTTCTGCCTCACCCTGACAAAGATAGGAGTCACTTGTCTCTCACCAGATGGACAAGCCCTTCTTTCTCTTCTGCCTGCAGCAGGTCCTGCTGCAAAATCATCACCTGTTCTCTCCTCATGGAAGCCATCAAGCTCAACACCATGTTCATGGAAAGGTATCACTTGCTCCCCACAAGGTAGAGTAATCTCCCTCTCTATTCCAGATACTTTTCTCAACCTCTCCTCTTTACCTCCTCAGCTATCCTCTTTATCAATGCTGCAACTTCTCAATCTCTCTTCCACCAATGTCTCTGGCTCCATTCCACCCTCTTTTGGTCAACTTTCCCATCTTCAGCTACTTGACCTCTCCTCAAACTCTCTCACTGGTTCCATACCTGCTGAACTTGGAAGCCTCTCTTTACTTCAATTCCTTTTCTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCTAATCTTACTTTACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTCAACGGCTCAATCCCATCACAGTTAGGCTCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGCAATCCATATCTCACCGGACAAATCCCTTCACAGTTAGGCCTACTCACCAACCTCACCACTTTTGGTGCAGCTGCCACGGGACTTTCTGGTGCCATTCCATCTACATTTGGTAACTTCATCAATCTACAGACTCTAGCACTTTATGATACTGAAATTTCTGGTTCAATGCCACCAGAACTTGGGTTGTGTTCTGAGCTGAGAAATCTGTATCTGCACATGAATAAGCTCACTGGCTCTATCCCTCCACAATTGAGCAAGTTGCAAAAACTTACTAGCTTGCTACTTTGGGGCAATGCCTTAACTGGTCCAATCCCAGCAGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGACCTCTCTGGTGAAATACCGGGGGACTTTGGGAAGCTCGTGGTTCTGGAGCAGCTTCATCTATCAGATAATTCACTCACAGGTAAAATACCATGGCAGTTGAGCAACTGTACCAGCCTTTCCACTGTTCAGCTCGACAAGAATCAGTTATCAGGTACTATTCCCTGGGAGTTAGGCAAATTAACGGTTCTACAGAGCTTTTTCTTATGGGGTAATCTAGTGTCTGGAACCATACCATCATCTTTTGGAAACTGCTCAGAACTTTATGCACTTGATCTTTCAAGGAATAACCTAACAGGTTCTTTACCAGAAGAGATTTTCGGCTTGAAGAAGCTGAGTAAGCTCCTGCTTCTGGGCAATTCATTAACAGGAAGATTGCCACCAAGTGTTGCAAATTGCCAGTCTTTGGTGAGGTTGAGGGTTGGAGAGAACCAGCTTTCAGGCCAGATTCCTAAAGAGATAGGTCAATTGCAGAATTTAGTGTTTCTTGACCTGTACATGAATCATTTCTCTGGAAGCATACCAGTGGAGGTTGCTAATATTACAGTTCTTGAGCTGTTAGACGTGCACAACAACTACCTCACTGGGGAAATTCCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGAAAAATCCCTTGGAGCTTCGGAAACTTCAGCTATTTAAACAAGCTCATCCTCAATAATAACTTACTGACAGGATCAATCCCAAAATCCATTAGAAATTTGCAGAAGTTAACTCTTCTGGATTTGAGTTACAACAGCCTCTCTGGTGGCGTACCCCCTGAGATTGGTCATGTTACAAGCTTAACCATCAGTTTGGACTTGAGCTCCAATTCATTTACAGGAGAAATCCCAGAATCAGTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAACATGCTTTATGGAGAAATCAAGGTTCTGGGGTCTCTGACTAGCCTCACCTCTCTCAATGTCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTCTATCCTTCAATTCATATATTCAGAACCCTGAGCTTTGTCAGTCCATTGATGGGGCTACCTGTTCTTCTAGTCTGATTCGAAAAAATGGTCTAAAATCTGCAAAAACCATTGCTATGATCACAGTCATTCTAGCCTCTGTTACTATAATTCTCATTGCATCCTGGATTCTAGTGACTCGTAATCATGGATACAAGGTTGAAAAAACATTGGGAGCATCAACTTCCGCATCAGGAGCTGAGGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATCGATAATATCTTGGATTGCTTGAAGGATGCAAATGTGATTGGAAAGGGCTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGAGTTGATTGCAGTAAAGAAGCTCTGGAAAGCAAGCAAAGCAGATGAAATTCTGGATTCTTTTGCTGCAGAGATACAGATTCTTGGATACATTCGGCATAGGAACATAGTGAGGCTCATAGGTTATTGTTCTAACAGGAGTGTTAATCTTCTTCTCTATAAGTACATCCCAAATGGAAATCTGCGACAACTTTTACAAGGGAACAGGAACTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGATCAGCTCAAGGTCTAGCTTACCTTCATCATGATTGCGTCCCTACAATTCTCCATAGAGATGTCAAGTGCAATAACATACTTCTAGACTCCAAATTTGAGGCATATCTGGCAGATTTTGGTCTTGCAAAGCTAATGCATTCGCCAAATTATCATCATGCAATGTCCAGAGTTGCGGGTTCCTATGGTTATATTGCCCCAGAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTTTGCTAGAGATACTAAGTGGTCGCAGTGCTGTTGAATCCCATGTTGGAGATGGCCAACACATAGTCGAATGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTGTATCAATACTAGACACAAAGCTGCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCATCGGAGCGCCCCACAATGAAAGAAGTGGTTGCACTACTAATGGAAGTGAAGAGCCAACCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTTAAATCAAAGCTGA 3246 0.4288 MENIVPRSVTTLLFSMIFFCLTLTKIGVTCLSPDGQALLSLLPAAGPAAKSSPVLSSWKPSSSTPCSWKGITCSPQGRVISLSIPDTFLNLSSLPPQLSSLSMLQLLNLSSTNVSGSIPPSFGQLSHLQLLDLSSNSLTGSIPAELGSLSLLQFLFLNSNRLTGSIPQHLSNLTLLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGAIPSTFGNFINLQTLALYDTEISGSMPPELGLCSELRNLYLHMNKLTGSIPPQLSKLQKLTSLLLWGNALTGPIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLSTVQLDKNQLSGTIPWELGKLTVLQSFFLWGNLVSGTIPSSFGNCSELYALDLSRNNLTGSLPEEIFGLKKLSKLLLLGNSLTGRLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEVANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGKIPWSFGNFSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNSLSGGVPPEIGHVTSLTISLDLSSNSFTGEIPESVSALTQLQSLDLSHNMLYGEIKVLGSLTSLTSLNVSYNNFSGPIPVTPFFRTLSFNSYIQNPELCQSIDGATCSSSLIRKNGLKSAKTIAMITVILASVTIILIASWILVTRNHGYKVEKTLGASTSASGAEDFSYPWTFIPFQKVNFSIDNILDCLKDANVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEILDSFAAEIQILGYIRHRNIVRLIGYCSNRSVNLLLYKYIPNGNLRQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPTILHRDVKCNNILLDSKFEAYLADFGLAKLMHSPNYHHAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSLNQS 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02309 1081 Gene3D Ribonuclease Inhibitor 478 575 IPR032675 -
Phco6g02309 1081 MobiDBLite consensus disorder prediction 1064 1081 - -
Phco6g02309 1081 SMART serkin_6 784 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02309 1081 SUPERFAMILY RNI-like 107 506 - -
Phco6g02309 1081 Gene3D Transferase(Phosphotransferase) domain 1 862 1077 - -
Phco6g02309 1081 ProSiteProfiles Protein kinase domain profile. 784 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02309 1081 SUPERFAMILY Protein kinase-like (PK-like) 769 1056 IPR011009 -
Phco6g02309 1081 PRINTS Leucine-rich repeat signature 631 644 - -
Phco6g02309 1081 PRINTS Leucine-rich repeat signature 128 141 - -
Phco6g02309 1081 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Phco6g02309 1081 SUPERFAMILY L domain-like 437 693 - -
Phco6g02309 1081 FunFam Putative LRR receptor-like serine/threonine-protein kinase 433 702 - -
Phco6g02309 1081 Pfam Leucine rich repeat 393 451 IPR001611 GO:0005515
Phco6g02309 1081 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Phco6g02309 1081 Gene3D Phosphorylase Kinase; domain 1 770 861 - -
Phco6g02309 1081 Pfam Protein kinase domain 786 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02309 1081 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 209 432 - -
Phco6g02309 1081 ProSitePatterns Protein kinases ATP-binding region signature. 790 813 IPR017441 GO:0005524
Phco6g02309 1081 Pfam Leucine rich repeat N-terminal domain 32 74 IPR013210 -
Phco6g02309 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Phco6g02309 1081 Pfam Leucine Rich Repeat 536 558 IPR001611 GO:0005515
Phco6g02309 1081 Pfam Leucine Rich Repeat 345 366 IPR001611 GO:0005515
Phco6g02309 1081 Gene3D Ribonuclease Inhibitor 286 383 IPR032675 -
Phco6g02309 1081 Gene3D Ribonuclease Inhibitor 384 477 IPR032675 -
Phco6g02309 1081 Gene3D Ribonuclease Inhibitor 576 702 IPR032675 -
Phco6g02309 1081 Gene3D Ribonuclease Inhibitor 33 189 IPR032675 -
Phco6g02309 1081 Gene3D Ribonuclease Inhibitor 190 285 IPR032675 -
Phco6g02309 1081 FunFam Putative LRR receptor-like serine/threonine-protein kinase 769 861 - -
Phco6g02309 1081 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 862 1074 - -
Phco6g02309 1081 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 31 193 - -
Phco6g02309 1081 MobiDBLite consensus disorder prediction 1062 1081 - -
Phco6g02309 1081 SMART LRR_typ_2 342 366 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 294 318 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 414 438 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 173 197 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 631 658 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 534 557 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 125 149 IPR003591 -
Phco6g02309 1081 SMART LRR_typ_2 582 606 IPR003591 -
Phco6g02309 1081 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 561 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02309 Phco-Chr6 44296785 44300284 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco6g02309 Pkinase 4e-45 CL0016