Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02295 ATGGGTGAAGATTCGGGAGATGGTAACGCTGACTGTTTCAGCCAGATGATGGCGTCGATGCCTGGTTTTCGCTTCCATCCCACGGATGAGGAGTTGGTTATGTACTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCAACGTTATTCGTGAAACCGATGTGTATAAGTGGGATCCTGAGGAGTTGCCAGGGCAATCCATACTGAAAACTGGAGATAGGCAATGGTTCTTTTTCTGTCCCAGAGATAGGAAGTATCCTAATGGTGCAAGGTCTAATCGAGCCACCAGACATGGATACTGGAAGGCAACAGGAAAGGATCGTAATGTGATATGCAATTCTAGGGAAGTTGGAGTGAAGAAAACCCTGGTTTTCTATATAGGCAGAGCTCCTAGTGGCACGCGGACTGATTGGGTTATGCATGAATACACCATGGATGAAGAGGAGCTTAAGAGATGTCAGGGTGTTAAGGACTATTATGCACTTTATAAGGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAGTGAACAAGATTGGGCAGCGGATGATGACATAGTGGATTTTAATATTAACATAACTGATCAGGAGGCTCCAAATGTTGTCTCTGAGAATGGGAATGTACTGCATCCTTTGCTTGATGATGAAATCAACGACATCATTAGAGAAATTTTGGATGATGAGCTTGTCCTTGATCAGCAGCATGTGAATGGTTTTCTTGACTTTCCTCAGGTTGTTACTGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCTGAGGGGGTTATGTTCCCTGAGACAATCAATTCTTGCTGTCAATTTTTTGATGTGCAGCCCAGCTTTGAGTTCAACCAGCCAGTTACTTCTCATTTACAAGTTTCTGAAGCTTCTGAGGTTTCTTCTGCCTCCAACCTTAAAACAAAAGGGCTTGATTTGGATGAGGATGGCTTTTTGGAAATTAATGATCTCATTGATACTGAACCTACATTTGCAAATGTGGAAAATCCTGTGGAGTACCCGCGGTTTGAAGATGGGTTAAGTGAACTTGATCTATACCAAGATGCAGAGATGTTTCTTCGTGACATGGGGCCAAATGAATATACAAATGCTCTTGTCAGCAACAATATCGAAAGTCAAACTTACCAGTTGCTATCCAATCCAGAGGATTCCAACCAAACTGTTGGTGAATTCTGGATTCATGGTGAAAGAAATACCCTGCTTCCATCAGAAGAAGGCTTTGTTGATTCTTTCTCGCTATCATCCGCAGGTGTTGTATGTGAATCTCTCAGCTTTCCTGAGGAAGGCAATTACAATCAAAGTAGCACCGTGGAAGACGTTTCTACAAGTAGCTTCTCCTCTTCCCTCTGGGCCTTTGTGGAGTCAATACCTACTACTCCTGCATCAGCTGCTGAAAGTGCTTTGGTGAATCGAGCATTGAATCGAATGTCTAGCTTCAGTCGGGTAAAGATCAGGCACACAAACATTGCTGCAGGTAAAGACACTGCAACTACGAAGAAAGCAGGGAGAAAGGGGTTTTCATTCCTTTTCTTCCCTATTCTTATTGCTTTATGTGCTTTTTTGTGGGTTTTTGTTGGAAGCTTAAGATTATTAGGCAGATCTATCTCTCCTTGA 1659 0.4274 MGEDSGDGNADCFSQMMASMPGFRFHPTDEELVMYYLKRKICGKRLKLNVIRETDVYKWDPEELPGQSILKTGDRQWFFFCPRDRKYPNGARSNRATRHGYWKATGKDRNVICNSREVGVKKTLVFYIGRAPSGTRTDWVMHEYTMDEEELKRCQGVKDYYALYKVFKKSGPGPKNGEQYGAPFSEQDWAADDDIVDFNINITDQEAPNVVSENGNVLHPLLDDEINDIIREILDDELVLDQQHVNGFLDFPQVVTEETQSTVVDQFSEGVMFPETINSCCQFFDVQPSFEFNQPVTSHLQVSEASEVSSASNLKTKGLDLDEDGFLEINDLIDTEPTFANVENPVEYPRFEDGLSELDLYQDAEMFLRDMGPNEYTNALVSNNIESQTYQLLSNPEDSNQTVGEFWIHGERNTLLPSEEGFVDSFSLSSAGVVCESLSFPEEGNYNQSSTVEDVSTSSFSSSLWAFVESIPTTPASAAESALVNRALNRMSSFSRVKIRHTNIAAGKDTATTKKAGRKGFSFLFFPILIALCAFLWVFVGSLRLLGRSISP 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02295 552 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 274 - -
Phco6g02295 552 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Phco6g02295 552 SUPERFAMILY NAC domain 14 169 IPR036093 GO:0003677|GO:0006355
Phco6g02295 552 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Phco6g02295 552 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Phco6g02295 552 FunFam Nac domain-containing protein 86 28 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02295 Phco-Chr6 44186225 44189347 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco6g02295 NAM 1.7e-36 No_clan