Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02257 ATGTCGAAAGATTGGAGCGCATCAAAGTGCAAAAACGTGTTGCCGCACGAGACCCCAGACCTGAAGGAGCACTACGTTGTGGGGCAGAAGGTGCTGGGAAAAGGGCACTTGGCCACCACCTACGTCTGCACCCACAAGGAGACAAGGAAGACTTACGCCTGCAAAACCATCCCAAAGGCCAAGCTTTTGAGCCAAGAGGAGTGTGATGATGTGTGGAGGGAGATTCAGATCGTGCACCATTTGTCGGAGCACCCCAACGTGGCAAGGATACAGGGAAGCTATGAGGACAAGTTTGCGGTGCACCTTGTGATGGAGCTGTGTCGTGGGGGTGAGCTTTTCTATAGGATCACTCAGAAGGGGCATTACAGCGAACGTGAGGCTGCCAAGTTAATGAAGACCATTGTTGGGGTGGTGGAAGGGTGCCACTCTCTTGGGGTCATCCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCCTGCCAGTAAGGCCACCATCAAGCTCATCGACTTTGGCTTCTCTGTCTTCTTTAAACCAGGACAAACCTTTAGTGATATAGTAGGAACTTGCTACTATATGGCCCCAGAGGTGTTGCGCAAACAATCTGGACCAGAAGTGGACGTTTGGAGTGCTGGTGTTATTCTATACATCTTACTGAGAGGGCTCCCACCTTTCTGGGCAAAATCTGAATCAGGAGTCTACAAACAGATTTTGCATGAAGAGGTTGATTTTGCATCTGATCCGTGGCCAAGTATATCAGGAAGTGCTAAAGATTTGATAAAACAGATGTTGGATAAAGACCCTAAGAAAAGAATTTCTGCTCATGAAGTCTTGTGTCACCCTTGGATTGTTGATGACAGTGTTGCACCGGACAAACCTCTGGATCCTGCTGTTTTGACACGCCTAAAGCATTTCTCAACAATGAATAAACTTAAGAAGATGGCATTGCGTGTCATTGTAGAAAGACTTTCAGAAGAGGAAATAGGTGGATTAAAAGAGTTATTTAGAATGATTGACGAAGACAATAGTGGGACAATCACTTTTCAGGAACTCAAAGATGGTTTGAAAAGTGTGGGATGTGATCTCGTGGAATCTGAAATTAAATCCCTTATGGAGGCGGCTGATATAGACAGCAATGGGACAATAGACTATGGTGAATTTCTCGCAGCTACACTGCACTTGAATAAGATGGAAAGAGAAGAGAATTTGGTTGCTGCTTTTTCCTATTTTGATAGAGATGGTAGTGGTTATATAACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTCGGCCTTGGTGTTTTGCATCTGGATGAGATGATCAAAGAGATTGATCAAGACAACGATGGGAGAATTAATTATGGGGAGTTTGCTACAATGATGAGGAGGGGCGATCCTGGTGGTTGTAGAAGCAGAACCATGAATAACACTTCATTATTGCATCAGTTAGGACTGAAAGACTCATCCTAA 1473 0.4487 MSKDWSASKCKNVLPHETPDLKEHYVVGQKVLGKGHLATTYVCTHKETRKTYACKTIPKAKLLSQEECDDVWREIQIVHHLSEHPNVARIQGSYEDKFAVHLVMELCRGGELFYRITQKGHYSEREAAKLMKTIVGVVEGCHSLGVIHRDLKPENFLFDTPASKATIKLIDFGFSVFFKPGQTFSDIVGTCYYMAPEVLRKQSGPEVDVWSAGVILYILLRGLPPFWAKSESGVYKQILHEEVDFASDPWPSISGSAKDLIKQMLDKDPKKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLKKMALRVIVERLSEEEIGGLKELFRMIDEDNSGTITFQELKDGLKSVGCDLVESEIKSLMEAADIDSNGTIDYGEFLAATLHLNKMEREENLVAAFSYFDRDGSGYITIDELQQACKDFGLGVLHLDEMIKEIDQDNDGRINYGEFATMMRRGDPGGCRSRTMNNTSLLHQLGLKDSS 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02257 490 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Phco6g02257 490 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Phco6g02257 490 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Phco6g02257 490 CDD EFh 404 463 IPR002048 GO:0005509
Phco6g02257 490 Gene3D Phosphorylase Kinase; domain 1 27 111 - -
Phco6g02257 490 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02257 490 SUPERFAMILY Protein kinase-like (PK-like) 15 309 IPR011009 -
Phco6g02257 490 Gene3D - 292 465 - -
Phco6g02257 490 ProSiteProfiles EF-hand calcium-binding domain profile. 437 468 IPR002048 GO:0005509
Phco6g02257 490 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Phco6g02257 490 FunFam Calcium-dependent protein kinase 1 28 111 - -
Phco6g02257 490 Pfam EF-hand domain pair 332 392 IPR002048 GO:0005509
Phco6g02257 490 Pfam EF-hand domain pair 402 463 IPR002048 GO:0005509
Phco6g02257 490 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Phco6g02257 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Phco6g02257 490 ProSiteProfiles EF-hand calcium-binding domain profile. 327 362 IPR002048 GO:0005509
Phco6g02257 490 CDD EFh 332 391 IPR002048 GO:0005509
Phco6g02257 490 FunFam Calcium-dependent protein kinase 1 292 466 - -
Phco6g02257 490 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02257 490 Gene3D Transferase(Phosphotransferase) domain 1 112 291 - -
Phco6g02257 490 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 458 - -
Phco6g02257 490 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Phco6g02257 490 SUPERFAMILY EF-hand 323 463 IPR011992 -
Phco6g02257 490 SMART efh_1 403 431 IPR002048 GO:0005509
Phco6g02257 490 SMART efh_1 437 465 IPR002048 GO:0005509
Phco6g02257 490 SMART efh_1 367 395 IPR002048 GO:0005509
Phco6g02257 490 SMART efh_1 331 359 IPR002048 GO:0005509
Phco6g02257 490 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02257 490 CDD STKc_CAMK 24 283 - -
Phco6g02257 490 FunFam Calcium-dependent protein kinase 5 112 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02257 Phco-Chr6 43731779 43739569 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco6g02257 Pkinase 7e-74 CL0016