Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02245 ATGGATCCAAAAGGAGGCTTATGTGCTAATAACTGCACAAGGTCCTCTTCATTAACCTCTCCTGGGAATGGATTGCAAACAAATTTGTCCTCAGATCCCCCCTCTTTCTATGGTCTCGAAATTGAATCACCTTTTAATACATTCAACCCACCTTCTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACAGATGTTGAGATCCCTGACCAAGAAAATTGTCCACTAAGTAACTCATCAAATACCACTAAGCTCCAAGATTGGAATCCAAGTGCAATGTTGAACGATCTTTGCTTCCTTGAAGAAAAGATTCATCAGCTTCGGGATCTAGTGCATTTAATTGACAATAAAAAGTGCCAACCCTTTGGACAATCTCATGAACTGGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGCAATCTTCTCCCCTCTGTTAGGCACACCCTCACAAATACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGGGATTAATCTCCCTTTTGGATCAGAACCAAGTAGTGGTATTAGGCCACAAAATAATAGTGGAAATAAACTGTTTGGTAATTCCACTTCGAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTACAACATGGAAGAACATGAGGCAAAAGAAGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTAGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGATGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCACATAAAGAAACTGGGTCTGAACCGAAGCTTATCAAGAGGTATTCCTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCTACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATACTTGCAGCAGATGTAACATGAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCAGCTATTCCTTTGGATGACATCAAAGGAGTGGCCGAGCCACCTGATCCCCAGAACAGAGAATGCAGTAATAAGGTAGGAAGTGTTAACTTCTGTTTTGGATCAAAGCTTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTATGAATTATTTCTCATCGCTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAACGAATTCCCTCAAACTCCCTTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTCATGTCAGGATCCTTTAATTATGCTCCAAAATTTGGTGGCGGTGAATCAAGTTCCGACAATCTGTAG 1536 0.4141 MDPKGGLCANNCTRSSSLTSPGNGLQTNLSSDPPSFYGLEIESPFNTFNPPSPIQSVLPGQSNTDVEIPDQENCPLSNSSNTTKLQDWNPSAMLNDLCFLEEKIHQLRDLVHLIDNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGNLLPSVRHTLTNTNPLVGQIDQLHGINLPFGSEPSSGIRPQNNSGNKLFGNSTSNDLPNTCEMEQNYNMEEHEAKEEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFLPLKTILCVKNHYKRTHCDKSYTCSRCNMKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDIKGVAEPPDPQNRECSNKVGSVNFCFGSKLSSENVVQNMMDMKGNIDDPMNYFSSLNFEGCNFGAFNEFPQTPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02245 511 SMART c2h2final6 346 368 IPR013087 -
Phco6g02245 511 SMART c2h2final6 259 281 IPR013087 -
Phco6g02245 511 SMART c2h2final6 308 341 IPR013087 -
Phco6g02245 511 MobiDBLite consensus disorder prediction 1 33 - -
Phco6g02245 511 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 79 482 IPR044300 GO:0010044|GO:0010447
Phco6g02245 511 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Phco6g02245 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 286 IPR013087 -
Phco6g02245 511 MobiDBLite consensus disorder prediction 183 213 - -
Phco6g02245 511 SUPERFAMILY beta-beta-alpha zinc fingers 257 284 IPR036236 -
Phco6g02245 511 MobiDBLite consensus disorder prediction 186 213 - -
Phco6g02245 511 MobiDBLite consensus disorder prediction 9 33 - -
Phco6g02245 511 Gene3D Classic Zinc Finger 243 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02245 Phco-Chr6 43629851 43631386 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g02245 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02245 6 43629851 43631386 Phco6g02245 6 43629851 43631386 ECH