Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02243 ATGGAAGATTCAGAGGAGGATGAGCTTTTGAATCTTAGCCTTTCAGTTGCTGCGGATAGGGAAAAGAAAAAGAAGGGAAAGATAATTAGGGAACATAGCGTCTCTATGAGTAGTACTACTGCTAGGAACTCCTATGAAAGCTATGAAGGGAAGATATTTAGGCTTCTTCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGGAAAGGAGTTGTAGAAGATGGGAATGGCCTCCCCTTGATCCATTTGCTGCTCTCAACTGCCACTGCTGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTATACCAAACTGTTTCCCTAACAGGTGACTCGGTTCAGCGTGTGGTGGCTTATTTTGCTGATGGTTTGGCCGCAAGGCTTCTCACAAGGAAATCTCCATTCTACGACGTGCTCATGGAGGAGCCAACAACTGAGGAAGAGTTCCTTGCATTCACAGATCTTTACAGGGTTTCACCTTACTTCCAATTCGCTCATTTCACAGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAGGAAGAGAGGAACAACCGCGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTCTCAGAGAAGGCAACCACTGGCAACCGCATATCCCTCAGGATAACCGGATTTGGGAAGAATCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGGCAGTCTTGTGTTTGAATTCCAAGGGCTGCTACGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAAAATGAAACGGTGGCTGTCAACTTAGTTTCTTATTTGAACACTTTGAGTTGTTTCATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTCATCCCTCCATTGTTGTTCTGGTGGAGCAAGAGGGTAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGCCTCCCACTAGATAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTCTGGGGAAAGAAATCAAAAGCTTGCTCAACAATGATGTGGATGGTGTGGATTGCCCAAAATATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACCAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACACATTATTGTCCTCTTCAGTTTGAGGAAGAAGGAGGTGGAGGTTTCAGGGTTTCTGAAAGAGACGAAGGAAGGGCTATCTCTTTAGGATGGCAAAATAGGTTTCTGTTGACAGTCTCAGCATGGCAATCAGTCTGA 1386 0.4416 MEDSEEDELLNLSLSVAADREKKKKGKIIREHSVSMSSTTARNSYESYEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDVLMEEPTTEEEFLAFTDLYRVSPYFQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATTGNRISLRITGFGKNLKELQETESRLVSFSKGFGSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLHPSIVVLVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLDSAERLRIEKKLLGKEIKSLLNNDVDGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02243 461 Pfam GRAS domain family 81 459 IPR005202 -
Phco6g02243 461 Coils Coil 351 371 - -
Phco6g02243 461 ProSiteProfiles GRAS family profile. 72 459 IPR005202 -
Phco6g02243 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 454 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02243 Phco-Chr6 43612622 43614007 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco6g02243 GRAS 7.2e-91 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco5g01110 5 42520820 42522211 Phco6g02243 6 43612622 43614007 PCT