Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02223 ATGGACTACAAACTCAGTACCACAACACCTTCTCCACCAATCCCAATCCATCTTCCCTCTATGCTCTCAAACTCTCCTCCATCTTCATCTTCTTCACCTCCCTCACACTCTCCCACACCTTTCCCTTCACCCTCTCAGGCCTCTCCCTCTGCTGCTCCCCCCTCTCCGCCGCCGCCGGTCGTCGTTAGCCCCTGTGCTGCCTGCAAGATCCTCCGCCGCAGGTGCGTCGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACTGATCCCCTCAAATTCACCATTGCTCATAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAGCTACCAGAGTCCCAGAGAGCAGATGCTGTGAGCAGCATGGTTTATGAGGCAAATGCTAGGATTAGAGACCCAGTTTATGGGTGTGCAGGTGCAATATGCCAACTTCAGAAGCAAGTTAGTGAGCTTCAAGCACAGTTGGCGAAAGCACAAGCTGAGCTAGTGAACATGCAGTGCCAACAAGCGAATTTGGTGGCTCTAATTTGCATGGAAATGAGTCAATCGCAGGAGCAGCACATGGTGCAGCCTCAACCTCTGGTTGACATGAGCTGCTTCATAGAGGACAACACTTTTGGAACTGCTTGGGAGCCTCTTTGGACATGA 654 0.5214 MDYKLSTTTPSPPIPIHLPSMLSNSPPSSSSSPPSHSPTPFPSPSQASPSAAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAELVNMQCQQANLVALICMEMSQSQEQHMVQPQPLVDMSCFIEDNTFGTAWEPLWT 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02223 217 ProSiteProfiles LOB domain profile. 63 164 IPR004883 -
Phco6g02223 217 Pfam Lateral organ boundaries (LOB) domain 64 161 IPR004883 -
Phco6g02223 217 Coils Coil 143 170 - -
Phco6g02223 217 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 63 188 - -
Phco6g02223 217 MobiDBLite consensus disorder prediction 31 56 - -
Phco6g02223 217 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02223 Phco-Chr6 43437236 43438511 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco6g02223 LOB 2.6e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02223 6 43437236 43438511 Phco6g02223 6 43437236 43438511 ECH