Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02193 ATGGAAAACATGGAGAGGAGTTCAGAAAGATGCTTAGATTCTCAGCTGTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCGGAACACGCTCATGGAAAAGTAGATTTTGGCCAAACCCGGGTTCCGCCACTCGTCCCTTGCAGACTCTCTGCAATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTCAAAATGAGGCTGATCCCTTTGAGGGAACATGAATTGGATTTGGAGGATGATTGTTTCTTGGGGAACACTGGAGTGGAGGGTCAAGAGAAACCTCCTACCTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCTCGTTACTGTGCTGAAACCATCTTCCCGAGGTTGGACTATTCAGCTGAGCCTCCAGTTCAGACAATCATCGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACGCCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGACTCCATTGTGTTTCTGAGGGCAGAAAACGGGGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAAGGGATTGGTGGAGGGTCTGAGTTCTCTTCCGGATGGAACCCTCTCTTTGGTGGGGGTTCTGGATTCTTGTGTGGGAGTGAGAGCAGCTTGGCGGGTGGTGCAAAAGGTGGCGGTGACGAGATGGTGGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCTATAGCTTGTGCTGTTAATGGTAGTCCCTTCGAGGTTGTGTACTATCCAAGAGCTAGTTCCCCTGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATTAGCTGGTTCATGGGAACCATTTCTTCTGTTCAGGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTACTTCACAATGTCAAGTGTGTAAACCCTTGGCTGGTTGAACTAGTCTCTAACATGCCCACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTCGTACATGACCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCTAGCAACCTTCTCAACTATACCAATTCTCTTTGTAACATTGAAAATAGTAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCCAGCAGACATGCTTCTAGGTGGGTTCTCTAGGCTTGACCATGCAACAAAACCTATTAGGCCTCCTTGTGGAACCTATAAGAACAACACTTCTAATACTACTACTAAGACCAATGTTGACATATCTTGCCTGTTGACTGTGGGAAATCCTAACCAGAATTTTAAGGAATCGAATGCTACAAAAGCACCTCACATCTTGTTATTTGGAAAACTCATTCACACAGAGCAAAAGAGTTCAAACACTAGCTCTGCCAGTACAACTGGGAATAGTGTGTCCGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGTCTTAGGTTCTGCATTGCACCAAAATAGCCCAATTGAGAATAATTCTGATGGAGGGTCTCCCTGGTACAAGGAACAGCACATGGCTGATCTTGGAACCGACAACGTTAACACGTTATGCATTGCTTTGTAA 1812 0.4641 MENMERSSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQTRVPPLVPCRLSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNTGVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGSEFSSGWNPLFGGGSGFLCGSESSLAGGAKGGGDEMVGRVAAESVVEAIACAVNGSPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLHNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFVHDPYFQVINQLPMPSFSSNLLNYTNSLCNIENSSSAGIQGARHAQFGLSPSDFPFNKLPADMLLGGFSRLDHATKPIRPPCGTYKNNTSNTTTKTNVDISCLLTVGNPNQNFKESNATKAPHILLFGKLIHTEQKSSNTSSASTTGNSVSEGNSLKTSNASDVLGSALHQNSPIENNSDGGSPWYKEQHMADLGTDNVNTLCIAL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02193 603 SUPERFAMILY DNA-binding pseudobarrel domain 106 216 IPR015300 -
Phco6g02193 603 Gene3D - 113 217 IPR015300 -
Phco6g02193 603 ProSiteProfiles B3 DNA-binding domain profile. 115 217 IPR003340 GO:0003677
Phco6g02193 603 MobiDBLite consensus disorder prediction 107 122 - -
Phco6g02193 603 FunFam Auxin response factor 309 382 - -
Phco6g02193 603 Pfam Auxin response factor 273 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco6g02193 603 Pfam B3 DNA binding domain 115 216 IPR003340 GO:0003677
Phco6g02193 603 SMART B3_2 115 217 IPR003340 GO:0003677
Phco6g02193 603 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 558 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco6g02193 603 MobiDBLite consensus disorder prediction 534 557 - -
Phco6g02193 603 FunFam Auxin response factor 113 217 - -
Phco6g02193 603 MobiDBLite consensus disorder prediction 103 122 - -
Phco6g02193 603 CDD B3_DNA 114 215 IPR003340 GO:0003677
Phco6g02193 603 Gene3D - 309 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02193 Phco-Chr6 43041947 43044510 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco6g02193 B3 2.6e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02193 6 43041947 43044510 Phco6g02193 6 43041947 43044510 ECH