Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02191 ATGAAAAGGCATTTACGTTTGATGTTAATTATTTTTGAAAAATTTGGTTGGGGGTGGTATGGGAAATGGGACTGGGGTAGATGGATTGAAATTGAAATGAAGATGGTTTGTGGGGTGGGGTGGAAGTCCGTGAATGGAGGAAAGGAGAGAGAAGGGGAATTTTCACCTGCCGAGAAAATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGATGACCTTCTCGATTTTCCTGTGGAGGACGTTGACGGCGGCGCCCCTACCTTGCCCTCCGTCGCCGCCGCCGCAGCCGGGAACTGCAACTCGCTTGCAAGCATCTGGCCCGCCGGGTCCGATTCATTTCCCGGTTCGGACTCGGTGTTTTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTGTTCAATTGGAATGGCTGTCCAACTTTGTGGAGGATTCGTTTTGTGGGGGAAGCTTGACCATGAAGAAAGTGGATGAGCCATCATGCACCACCACAAAGGAAGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTGCTTGAGAGCAGCAGTTCATGCTCCGGGGGAAAGACGGTGCCGGCGCCGCCACGCAGCCCGGAGGTTTACATCCCTGTGCCATGTGGACGTGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCTCGCCCTGCCATGAACCTCATTTCCCCTGCCTCATCCTTTGTCGGGGAGAACATGCAGCCAAATGTAATTTCCTCCAAGGCCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAACTTGTAGCTAAGATGCGAAAGCAAGGCTGTGGGGAGGCGAAGAAAAAAAAGAAAGTGAAGGTGACACTTGCTGCAGCTCCTGGTGATAGCAATAACCAGAATGGGTTGCAACCGGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTATGCAATGCATGTGGTGTTCGTTTCAAGTCTGGGAGGCTCTACCCGGAGTATCGCCCTGCTGCAAGCCCAACCTTTTGTCCATCTGTGCACTCCAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGAGGCATTGACAAATCTGGTTTTGCAATGAATGCAGCTGCCTCACCTGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1242 0.5153 MKRHLRLMLIIFEKFGWGWYGKWDWGRWIEIEMKMVCGVGWKSVNGGKEREGEFSPAEKMVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGGAPTLPSVAAAAAGNCNSLASIWPAGSDSFPGSDSVFSGNSASDLSAELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKVDEPSCTTTKEDSVHNQFHTSSPVSVLESSSSCSGGKTVPAPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENMQPNVISSKASSDSENFAESQLVAKMRKQGCGEAKKKKKVKVTLAAAPGDSNNQNGLQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSVHSNSHKKVLEMRCRGIDKSGFAMNAAASPELIPNTNSSLTLEYM 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02191 413 ProSiteProfiles GATA-type zinc finger domain profile. 313 349 IPR000679 GO:0006355|GO:0043565
Phco6g02191 413 Gene3D - 315 363 IPR013088 GO:0006355|GO:0008270
Phco6g02191 413 SMART GATA_3 313 363 IPR000679 GO:0006355|GO:0043565
Phco6g02191 413 FunFam GATA transcription factor 308 395 - -
Phco6g02191 413 Pfam GATA zinc finger 319 352 IPR000679 GO:0006355|GO:0043565
Phco6g02191 413 CDD ZnF_GATA 318 375 IPR000679 GO:0006355|GO:0043565
Phco6g02191 413 PANTHER GATA TRANSCRIPTION FACTOR 71 382 - -
Phco6g02191 413 MobiDBLite consensus disorder prediction 223 242 - -
Phco6g02191 413 ProSitePatterns GATA-type zinc finger domain. 319 344 IPR000679 GO:0006355|GO:0043565
Phco6g02191 413 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 317 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02191 Phco-Chr6 43008403 43011661 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco6g02191 GATA 1.5e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02191 6 43008403 43011661 Phco6g02191 6 43008403 43011661 ECH
Phco5g01139 5 44239181 44242088 Phco6g02191 6 43008403 43011661 PCT