Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02176 ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCACTGGCCCCGGAATTTCGCCCTACCGACACTGAATTTGCTGACCCAATTGCTTACATTTCAAAGATTGAGAAGGAAGCCTCCAGCTTCGGGATTTGTAAGATTATCCCACCAATGCCCAAACCCTCAAAAAAATATGTTTTTTCTAATTTGAATAGGTCACTCTTGAAGTGCCCGGATTTGGGTACAGATAACAGTTCATTAGGTGTTTGTAATTCATTAAAAACCAGTTCTGGGGATGGTAGTAATGATGGGGTGTCTCGAGCCGTGTTTACTACAAGGCATCAAGAACTAGGGCAGAGTCAGAGTGTGAAAAAAGCCAAAGGAACGGTTCAGAATCCATTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGTTTATACTCTGGAACAGTTTGAGTCTAAATCGAAGTCTTTTGCTAGAAGCTTGCTAGGATCGGTGAAGGATGTTTCTCCGCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAAAAGCCAATATATGTGGAGTATGCCAATGACGTGCCTGGGTCTGCTTTTGAAGAGTCAAAGGGTCAATTTCATTATAGTCATAGAAGGCTAAGAAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGTAATGGGTTGCGGAAGAGATACCCAAACTGATGAGACTAAGGGTGCTTCTGTCCAAAGTGATGCTGCATGTTTACGGATGACCAAATCAGTTGCTACTGGGTCAACATTTTCATCGAATGAAGATTCACAATCTTGTAAGGAAAAGAGTACAGATACCGGCAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACCTGCAAGTTATTGCACGATCATCTGGCTCACTTACACGTTTTATGCCGGATGATATTCCTGGTGTCACTTCACCTATGGTGTACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCACGAGCTTCACAGCTTGAATTTTCTTCACACTGGATCATCAAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGTACCGAGGGTTATGGTGGTGATATTGATCACTTAGCCGCATTGAAACTTTTGGGTGAAAAAACAACTCTTTTGTCACCTGAGGTAATTGTTGCATCTGGAATTCCTTGTTGCAGGTTAACACAGAACCCTGGCGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCCAAGGAAGCTGCAGTGCGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTACTTTACTTACTGACCATGTCTTTTATTTCAAGAGTTCCAAGAACACTATTACCTGGTGTGCGGAGTTCTCGTTTGAGAGACCGTCAGAAAGAAGAAAGGGAGTTTTCAGTAAAACAGGCTTTCATTGAAGACATGCTACAGGAAAACAAGCTGCTATCCATTCTTCTTGGAAAGGAAGCTGCTAAAAGAGCTGTTTTATGGAATGCTGATTTGCTGCCAGATTTAACTTCTACAACTGGAACCTCTGTGGCCGACATATCAAATATTAGCTCTACTGAAAAGAATAGTCATTATCTGCTTGATGATGAGATGAGTTTGTATTTGGATTGTTTGACTAATATAGATATTGGTGGTGATGATCTTCCCTATCACTTCCAAACTGATTCCGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGGCTGTGATACAACCAACTGAGAAATTGACAATGGAACTTCTTCCTGATAATCATCTAATTCAAGTTTCCTCTCCAGACTCTACTACTGGTCTTCATAGTTCCATATCAAGGGATCTTTCTGTTTCTGAACTTTCATCAGTAAAGGAGATGCCAGATCACTCATTAAATAAGTGTAGTAAATGTTGGAACACCTCCAGTAAATTTTTCAGGCCTCGGATTTTCTGCCTGGGGCATGCTGTTCAAATAGTAGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAAGGAAGTTGCGGAAGAGATACATGGTGCTTTTAATTATAATGAGATTGCATTAGATACCGCATCCCCAGAAAATTTGACCCTGATAGATCTGGCTGTTGATGGTGAAGAGCTTGATCAATGTGAGGACTGGACATCAACACTAGGCATTAACCTACGGAATTGGGTCCATGCAAGAAATAATGCTCCATCTAAACAAGTTCCTTGGACACTAGAGACATTGTTCTATGATAATTGTCCTGCTTCAAATATTTTAGCTTTGAATTGGCTGTCTCGGAGATCTCGGTCAAAAAGGTCGAGTCATTTAGCTCAGACTAAATCCTCTTACAGTATTGAGAGAAAAAAGGATGATCTGTTGGGTGGAAGAATAAATGAGTCCATTGCTGAAAAGAAGCTAATTCAGTATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGGAGTTTCCCTGTAGCAAATATGGTATGTGAATTCCAAGAGAAGTCCAAAAATTTGTCAGCTACCTTAAGTGCGGATCATAATAATTGTGTTTCTAAAACTCTTGAAGCGGAGAATTTAAGTACCGAGTGTGCATTGCCATGTGCTTCTGCTTCTACTGAAATGTCTGCAATGCATCCTGAAATCCAGATTGCTGAAATACCCATTAGCACGAAAATGAATGCTGTGTCACAACCTTCAAATTCCATTCCTGATCATATTTTAATGATTGAAAAAGTTGGAGCTGAGATTGAGAATCAAACCATGCAAGAATCACATGTAGACAGAAATAATGATTTAACACTCAGTCACTCTAAGATGCACGGCAATACCAGTGTCTCAGAAATATGTGGCAAGGAGAGCCAAGATTGTCAGGACAAGAAATGTTCTAGTGCACTTTCAAATGCAACAGATGGAAATATTGAAATGATTAGAAAGACTGAAATTGCAGAAGCAGTTATGATTGATAGCAACTGTAATAGGTTAACATTGGATGAAGAAGGGCATCAAGAATATCAGTCTACCTACAAAAGCAACAAGGAGGAAGCTGCTTTATCAACTGCTTCAATGGTAAATCAATCTACACTTGCATCTATGGATGGAAATGTTGAAAGTCCAAATAATAATTATATCTCAGAAAGAATTAGGAATCCAATTTTCCTAGAAAGGACAACTGAAGAAGAAATTGATTCTATATGTGAAACGCACAAGGAACCTCGAATTGATGGCGGACCAATTAGCGAACATACTCCAAATGAAGTTTGTGAAGTTGGAAGGGAGTTTTATGCTTCTGCAGACCTGCATAATAATGGAATCTTGGATGGTGAGATGCAACAGGTAACTCAGGCTGGAAAAAATAGCAAATTGGAAATAAGTCAGTCTTCTCATGTTTCAGCAAAACAACAGTGTCCGTCGTCTGTGCAGTGTCGGATTGAAAATATGAACAAAATTAACGAGGAACCTGTTTCTAGTTATGCTGCAAAAGTTGAAAATAAAAGCGTAACTTCAATAGAGTTAGGATTAGGATGTTCTGAAGTTTCAGTGGAAACCTGTCCAAACAAAGACTCCTGTATTCAATTTATTCCAGATAAAGAAAAAGAAATGGAAATCCAGTCAGTTAATACATCCATAAAGGACTCTTCTCTATCAATGCAGGAAGGCTCAAAAATTGGGAAAGAGATTTATGTTGCAGATAACATAAATGAAATCAAAGCTGATTTGTCCCAAGATAAAAGGGGGCTGAAAAGCTGTGAGTTGGCTACAGAAGTTCCCAGATTAAATGCTGGGAAGAAAAAAAAGAGGAAAGTGGAACAAACAAGGAGGACCGAATCTAATTCTGACAACTTTATTAGAAGTCCATGCGAGGGATTGAGGCCAAGAGCTGGGAAGATTGCAGCTGGAAAAAGTAGAGTAGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAACGGGCAAGGAGATCTTCTGAAGTTTTGGTTCCTTGCAAAAATAAAAAAGATGGTGTTAAAAGGTCCCACAAGTGCGACCTCGATGGTTGCAGAATGAGTTTCAAGACCAAGGCAGAGTTACTGTTGCATAAACGAAACCTTTGCCCGCATGAAGGGTGTGGTAAGAAGTTCAGTTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGACGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTTCATGTCGTTCAAGTGGGCTTGGGCAAGGACAGAGCACATACGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTGGAGGGGTGCGGCCTTTCCTTCAGGTTTGTATCAGACTTTAGCAGACACAGACGGAAAACAGGACACTATGTGAAACCTCCTGCTTGA 4524 0.4067 MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASSFGICKIIPPMPKPSKKYVFSNLNRSLLKCPDLGTDNSSLGVCNSLKTSSGDGSNDGVSRAVFTTRHQELGQSQSVKKAKGTVQNPLSGVHKQVWQSGEVYTLEQFESKSKSFARSLLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRLRKRTYYKSRLDSSDCKQTVMGCGRDTQTDETKGASVQSDAACLRMTKSVATGSTFSSNEDSQSCKEKSTDTGNDMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYGGDIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFSVKQAFIEDMLQENKLLSILLGKEAAKRAVLWNADLLPDLTSTTGTSVADISNISSTEKNSHYLLDDEMSLYLDCLTNIDIGGDDLPYHFQTDSGALACVGCGILGFPFMAVIQPTEKLTMELLPDNHLIQVSSPDSTTGLHSSISRDLSVSELSSVKEMPDHSLNKCSKCWNTSSKFFRPRIFCLGHAVQIVEMLQSKGGANVLIICHSDYQKIKAHAKEVAEEIHGAFNYNEIALDTASPENLTLIDLAVDGEELDQCEDWTSTLGINLRNWVHARNNAPSKQVPWTLETLFYDNCPASNILALNWLSRRSRSKRSSHLAQTKSSYSIERKKDDLLGGRINESIAEKKLIQYSRRKFKSKQRSFPVANMVCEFQEKSKNLSATLSADHNNCVSKTLEAENLSTECALPCASASTEMSAMHPEIQIAEIPISTKMNAVSQPSNSIPDHILMIEKVGAEIENQTMQESHVDRNNDLTLSHSKMHGNTSVSEICGKESQDCQDKKCSSALSNATDGNIEMIRKTEIAEAVMIDSNCNRLTLDEEGHQEYQSTYKSNKEEAALSTASMVNQSTLASMDGNVESPNNNYISERIRNPIFLERTTEEEIDSICETHKEPRIDGGPISEHTPNEVCEVGREFYASADLHNNGILDGEMQQVTQAGKNSKLEISQSSHVSAKQQCPSSVQCRIENMNKINEEPVSSYAAKVENKSVTSIELGLGCSEVSVETCPNKDSCIQFIPDKEKEMEIQSVNTSIKDSSLSMQEGSKIGKEIYVADNINEIKADLSQDKRGLKSCELATEVPRLNAGKKKKRKVEQTRRTESNSDNFIRSPCEGLRPRAGKIAAGKSRVEINQVDKENQVAKRARRSSEVLVPCKNKKDGVKRSHKCDLDGCRMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCFMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHYVKPPA 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02176 1507 ProSitePatterns Zinc finger C2H2 type domain signature. 1447 1469 IPR013087 -
Phco6g02176 1507 ProSitePatterns Zinc finger C2H2 type domain signature. 1477 1501 IPR013087 -
Phco6g02176 1507 ProSiteProfiles Zinc finger C2H2 type domain profile. 1475 1506 IPR013087 -
Phco6g02176 1507 MobiDBLite consensus disorder prediction 1313 1337 - -
Phco6g02176 1507 Pfam jmjN domain 17 50 IPR003349 -
Phco6g02176 1507 SUPERFAMILY beta-beta-alpha zinc fingers 1416 1452 IPR036236 -
Phco6g02176 1507 Gene3D Classic Zinc Finger 1413 1500 - -
Phco6g02176 1507 Gene3D Cupin 9 465 - -
Phco6g02176 1507 SUPERFAMILY Clavaminate synthase-like 293 458 - -
Phco6g02176 1507 ProSiteProfiles JmjC domain profile. 292 461 IPR003347 -
Phco6g02176 1507 FunFam Probable lysine-specific demethylase ELF6 1442 1471 - -
Phco6g02176 1507 SMART c2h2final6 1445 1469 IPR013087 -
Phco6g02176 1507 SMART c2h2final6 1415 1439 IPR013087 -
Phco6g02176 1507 SMART c2h2final6 1475 1501 IPR013087 -
Phco6g02176 1507 SMART c2h2final6 1392 1414 IPR013087 -
Phco6g02176 1507 Pfam JmjC domain, hydroxylase 325 444 IPR003347 -
Phco6g02176 1507 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1441 - -
Phco6g02176 1507 MobiDBLite consensus disorder prediction 262 287 - -
Phco6g02176 1507 ProSitePatterns Zinc finger C2H2 type domain signature. 1417 1439 IPR013087 -
Phco6g02176 1507 ProSiteProfiles Zinc finger C2H2 type domain profile. 1415 1444 IPR013087 -
Phco6g02176 1507 SMART cupin_9 292 461 IPR003347 -
Phco6g02176 1507 ProSiteProfiles Zinc finger C2H2 type domain profile. 1445 1474 IPR013087 -
Phco6g02176 1507 SUPERFAMILY beta-beta-alpha zinc fingers 1455 1499 IPR036236 -
Phco6g02176 1507 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Phco6g02176 1507 SMART JmjN_1 15 55 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02176 Phco-Chr6 42757008 42768371 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g02176 JmjC 9.5e-36 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02176 6 42757008 42768371 Phco6g02176 6 42757008 42768371 ECH