Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02144 ATGTCTCAAGCTAGCATTTTCAATGCAAACATCATTTCAAAGATCCCTATTTATGACCTTTCTTCATACACATTGAGTAAACCAAGACAAAGAAAGCAGGGAAAAAATCAAACATACTTCAGCAGAAGCATATTCGGATATTTGATAGGTTTTAGTTTTGGTTCAGATATTAGTTCCAGATTTGCACAACAGTTATGGCGGCAGCTTCCTCATCCACTCCATTCTCGGGAATCAGAGAAGAAAGCCCTCAGATTACAACACACCATCAACCCTCCACAGTTGCTCCAATCACAGTGCCTCAAAAGAAACGGAGGAATCAACCTGGAACCCCAAGCAAATCCAGACGCAGAGGTGATAAAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGATTTCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTTCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCAAAAAAGAAAGGTTTATCTTTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCAAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCGTTCTGTGATGCATTAGCACATGAGAGTGCAAGATACCCCAGTGGCTCAAACCCTTTGGGAACTCATTTGTTTGGCACAAATCACACTAGTTTAACCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCAAAATCAGAACCAAACAGTCACTAACATTGGTGCAACTCTAAAGTTTGAGCACTTGATTCCACCTCTAAATCAGTCTTCATTTGGACACTCACCACAATCAATGCCTTCCTCAGCTTTCTTCATGAATAACAACACCAATCAAACATTATTTGAAGAACACCAATCACAACAAGGACAACTATTCTCAAACAAACAACTACATGGCCTAATGCAGCTCACTGCTCTAGATGGCAACACTAACAACTCCAATTCTTCATCAGTTGCTGCTCCTAATTCCAATCTCTTCAACCTCAGCTTCTTCCCAAGTAGCAATAGCACTAGCACCATTATCCCTGATCAATTCAACAACATAAGTGGTAGTGACCAAGGAACAACACCACCACCACTCTTTGTTAATAACAACACTGCAGTAAGTGATCATGTTGGTTCAAGTTTTTCTTCGTTCTTTGGTGATTCAATAGAAAACGTATCATCCCCTCATATGTCTGCCACTGTGTTGCTTCAAAAAGCCTCTCAAATGGGTTCAACCACAACCACCAGCGGTTCTTCCTTACTTAGAGGAATGTCTAGCAATGGTTCCAAAGCTGAAAATGGTCACCACCACCACCACAATCTTCAAGGGTTGATGAACTCTATTGCCAATGGAAACACATCCTTGTTTAGGAACATGCAAGGGAATGAAAACAACCTTTGTGGGTTTCACAACGTCGACGAGTCCAACCATAAGTTGCCCCAGAATCTTAATGTAAACTTTGGAGGTTCTGATAAGTTGACCTTAGACTTTTTGGGTGTTGGAGGAATGGTGAGAAATATGAATGGTGGATTTTCACAGAGAGAACAACTACAACAACAACAACGTGTCATGGGTACTGAGTTCTTTGGACCCTGA 1782 0.4226 MSQASIFNANIISKIPIYDLSSYTLSKPRQRKQGKNQTYFSRSIFGYLIGFSFGSDISSRFAQQLWRQLPHPLHSRESEKKALRLQHTINPPQLLQSQCLKRNGGINLEPQANPDAEVIKLSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEQKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARYPSGSNPLGTHLFGTNHTSLTLSQVGTQLSQVQNQNQTVTNIGATLKFEHLIPPLNQSSFGHSPQSMPSSAFFMNNNTNQTLFEEHQSQQGQLFSNKQLHGLMQLTALDGNTNNSNSSSVAAPNSNLFNLSFFPSSNSTSTIIPDQFNNISGSDQGTTPPPLFVNNNTAVSDHVGSSFSSFFGDSIENVSSPHMSATVLLQKASQMGSTTTTSGSSLLRGMSSNGSKAENGHHHHHNLQGLMNSIANGNTSLFRNMQGNENNLCGFHNVDESNHKLPQNLNVNFGGSDKLTLDFLGVGGMVRNMNGGFSQREQLQQQQRVMGTEFFGP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02144 593 Gene3D Classic Zinc Finger 186 264 - -
Phco6g02144 593 MobiDBLite consensus disorder prediction 471 492 - -
Phco6g02144 593 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 154 IPR013087 -
Phco6g02144 593 SMART c2h2final6 173 203 IPR013087 -
Phco6g02144 593 SMART c2h2final6 132 154 IPR013087 -
Phco6g02144 593 SMART c2h2final6 208 228 IPR013087 -
Phco6g02144 593 Gene3D Classic Zinc Finger 113 182 - -
Phco6g02144 593 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Phco6g02144 593 Pfam Zinc-finger double-stranded RNA-binding 132 154 IPR022755 -
Phco6g02144 593 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 104 582 IPR031140 -
Phco6g02144 593 SUPERFAMILY beta-beta-alpha zinc fingers 131 228 IPR036236 -
Phco6g02144 593 MobiDBLite consensus disorder prediction 471 500 - -
Phco6g02144 593 FunFam protein indeterminate-domain 12-like 111 179 - -
Phco6g02144 593 FunFam protein indeterminate-domain 5, chloroplastic-like 186 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02144 Phco-Chr6 42318868 42323500 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g02144 zf-C2H2_jaz 3.6e-05 CL0361