Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02142 ATGAAAAGAAAGGGAGGTTATGAGAACCAAGATGCTGTGAACAGAGGTGCTTGGTCTGCTGAGGAAGACCAAATCCTTGTTAACTACGTTCACCTCCATGGAGAAGGAAAATGGGGGCAGATTTCCAGAAGAACTGGTTTAAAACGAGGGGGGAAGAGTTGCAGACTTCGATGGTTGAATTATCTAAAGCCAGATATAAAGAGAGGAAACATTTCTTCGGATGAAGAAGATCTCATTATCAGGCTACATAGCCTCTTAGGGAATAGATGGTCTCTTATTGCGGGACGATTGCCTGGGCGTACAGACAATGAAATCAAGAACTATTGGAATACTTATTTGAGAAAGAAAGTAGAGGAGAAACACAATGATAACAACAATATGGAATTAGGAATTGAATCTCCACAGTGCACAAATATTGATCCTACCAAATCTTCTCAACCAGTAAGGTGTAATGAGGCTATGATGCCAACTGGAGCACTCAATGATTCAGTCAACACAAAGGGTTTAACTTCAACAAATTGGACTGAAAACCCATTTGAATCTACCCCACCTGATCATCATGATGGCTGCTCAGAAGGTTTCCCCACACACTTTGATATAAGTGACCTGTTTATGCCCCAGGAGGATTGTCATTTCAATGGATATTCTTGTGTTGAATTACCCCAACACTTTGGAGATGAATCATGCGGTGTTAATGATGCGATATGTGAAACATGGTATGATAATTGGAAGAATGAAGACTATTTTCCACTAGAATATGATGCGGACTTTCCTTTATTTTAA 783 0.3997 MKRKGGYENQDAVNRGAWSAEEDQILVNYVHLHGEGKWGQISRRTGLKRGGKSCRLRWLNYLKPDIKRGNISSDEEDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTYLRKKVEEKHNDNNNMELGIESPQCTNIDPTKSSQPVRCNEAMMPTGALNDSVNTKGLTSTNWTENPFESTPPDHHDGCSEGFPTHFDISDLFMPQEDCHFNGYSCVELPQHFGDESCGVNDAICETWYDNWKNEDYFPLEYDADFPLF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02142 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 162 - -
Phco6g02142 260 FunFam Myb transcription factor 15 67 - -
Phco6g02142 260 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Phco6g02142 260 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Phco6g02142 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Phco6g02142 260 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Phco6g02142 260 Gene3D - 7 68 - -
Phco6g02142 260 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Phco6g02142 260 FunFam Transcription factor TT2 71 138 - -
Phco6g02142 260 CDD SANT 72 113 IPR001005 -
Phco6g02142 260 SMART sant 67 115 IPR001005 -
Phco6g02142 260 SMART sant 14 64 IPR001005 -
Phco6g02142 260 Gene3D - 70 135 - -
Phco6g02142 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Phco6g02142 260 CDD SANT 17 62 IPR001005 -
Phco6g02142 260 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02142 Phco-Chr6 42266167 42267294 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g02142 Myb_DNA-binding 1.2e-15 CL0123