Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02114 ATGCACAAACCATACTCTTTCTCCTGCATATCCTCTGATAGTGCCTGCTTTGAAGCTGACCAGGTTGGCAATGAAGATTCCATTTCCCTCTCCCTTGGCCCTCCTTGCCACCACAAAGCCAAACTCTCTAACCCAAAGCACTCTTCTGCTATGCGTGGTCATCAGAAAAACCCTAGCTCTGATGATCTCAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGTTAGCAAACCTTCTTCCACTCCGATTCATGGTCGATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCCACTCAATTCTCTTGCACAGTCTGTAACAAAACCTTCACCCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCAGAGTATAGGAAAGGGACGGAGTCACTGAGAGGGTCAAAAGCAGGTTCTTCGATGCTGAGGATGCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAAAGGAAGCATGGAGGGAAGCCATTCGAGTGCAGGAAGTGTAGTAAGGCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGATCCCTCAAAGACCATGTCCGTGCATTCGGTAATGGGCATGCTCCACACAGCTTGGGTGGAGAAAGAGGCAGTCAAGATGAGAGGGAAATGGTTGATTTTAGTTTGAAATAA 795 0.4755 MHKPYSFSCISSDSACFEADQVGNEDSISLSLGPPCHHKAKLSNPKHSSAMRGHQKNPSSDDLSGVTVALHIGLPTTVSKPSSTPIHGRYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGTESLRGSKAGSSMLRMPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCSKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHSLGGERGSQDEREMVDFSLK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02114 264 MobiDBLite consensus disorder prediction 241 264 - -
Phco6g02114 264 FunFam Zinc finger protein WIP2 159 241 - -
Phco6g02114 264 SUPERFAMILY beta-beta-alpha zinc fingers 86 128 IPR036236 -
Phco6g02114 264 SMART c2h2final6 105 127 IPR013087 -
Phco6g02114 264 SMART c2h2final6 153 185 IPR013087 -
Phco6g02114 264 SMART c2h2final6 190 210 IPR013087 -
Phco6g02114 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Phco6g02114 264 Pfam Zinc finger, C2H2 type 105 124 IPR013087 -
Phco6g02114 264 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Phco6g02114 264 Gene3D Classic Zinc Finger 128 215 - -
Phco6g02114 264 MobiDBLite consensus disorder prediction 248 264 - -
Phco6g02114 264 MobiDBLite consensus disorder prediction 37 62 - -
Phco6g02114 264 MobiDBLite consensus disorder prediction 48 62 - -
Phco6g02114 264 PANTHER ZINC FINGER PROTEIN WIP2 22 248 IPR043584 GO:0003700|GO:0010468
Phco6g02114 264 SUPERFAMILY beta-beta-alpha zinc fingers 175 210 IPR036236 -
Phco6g02114 264 Gene3D Classic Zinc Finger 104 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02114 Phco-Chr6 41676544 41678009 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco6g02114 zf-C2H2 0.0055 CL0361