Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02101 ATGCACTCCTCCGCCGAGGACGACTCCGACAACCCTGCCACCAATGCGGGCGCGGAGTGGACGTTCACCGCTAGGAACCACGCACCCTCGTCGGACCCGTGCTGGGACGCCATAGAGCGCGGCGGCGGCACCCTGGGACTGGGCGACCTCCGTTTTGTGCAGCGCGTGGGGAGCGGCGACATCGGAAGCGTGTACTTGGTGGAGCTGAAGGGCTCGAACGGGTGCCTCTTGGCGGCAAAGGTGATGGACAAGAAGGAACTGGTGGCCAGGAACAAAGACACGAGGGCAAAGGTTGAGAGAGAGATTCTGCAAGTGGTGGATCACCCTTTTTTGCCAACTCTTTACGCGTCGCTGGATTCCCCTCGCTGGTCTTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACGTCCTCCGCCAGCGCCAGCCCGAAAAACGCTTCCACCACGCCGCCGTTAGGTTCTACGCATCTGAAGTTGTGGTCGCCTTGGAGTACCTACACATGATGGGGATAATATACCGTGATTTGAAGCCTGAAAATGTGCTGATAAGATCGGACGGTCACGTAATGCTCACAGACTTTGACCTGTCACTGAAAGGCGACGACACAACATCAACGGCTCAGATCGTGTTCGATCAAGATCCACCGGGGAGCAGGAGTTGCAACGAGAATTCGAAGAACCAATGCGCGCTGGCAATGTCATCGTGCATGCTGCCGAATTGCATCGTGCCATCTGTGGCATGCTTCCACCAAAAAGGCGGTCGTAGGAAGAGGTCCTCGCGGTGTGGGTCGGTGGAGATCGTAGCGGAGCCAATAGAAATTCGATCGACGTCGTTCGTTGGGACCCACGAGTACTTGGCGCCAGAAGTGATTTCGGGGGAGGGTCACGGTAACGGCGTTGATTGGTGGACATTGGGAGTGTTCATTTTTGAACTATTCTACGGGATGACACCATTCAAAGGGCTTGAGCATGAGCTAACCCTAGCGAACATAGTGGCACGTGCCCTTGAGTTCCCTAAGGAGCCCATGATCCCAGGAGCAGCCAGAGATTTGATCTCTCAACTCTTGGTGAAGGACTCAACAATGAGACTAGGGTCAACCATGGGTGCCCTAGCAATTAAGCACCACCCCTTCTTCAATGGAGTTAATTGGGCATTGTTGAGGTGTGCTACCCCTCCATACATCCCCTCATCAGACAAGTGCAAGGAATTGGTTCGACTCTACAATTGCACAAACAATACCATAGACTTCTATTAG 1260 0.5516 MHSSAEDDSDNPATNAGAEWTFTARNHAPSSDPCWDAIERGGGTLGLGDLRFVQRVGSGDIGSVYLVELKGSNGCLLAAKVMDKKELVARNKDTRAKVEREILQVVDHPFLPTLYASLDSPRWSCLLTEFCPGGDLHVLRQRQPEKRFHHAAVRFYASEVVVALEYLHMMGIIYRDLKPENVLIRSDGHVMLTDFDLSLKGDDTTSTAQIVFDQDPPGSRSCNENSKNQCALAMSSCMLPNCIVPSVACFHQKGGRRKRSSRCGSVEIVAEPIEIRSTSFVGTHEYLAPEVISGEGHGNGVDWWTLGVFIFELFYGMTPFKGLEHELTLANIVARALEFPKEPMIPGAARDLISQLLVKDSTMRLGSTMGALAIKHHPFFNGVNWALLRCATPPYIPSSDKCKELVRLYNCTNNTIDFY 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02101 419 SMART serkin_6 50 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02101 419 FunFam serine/threonine-protein kinase D6PKL2 49 134 - -
Phco6g02101 419 Gene3D Transferase(Phosphotransferase) domain 1 135 210 - -
Phco6g02101 419 ProSiteProfiles Protein kinase domain profile. 50 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02101 419 PANTHER FLIPPASE KINASE 1-RELATED 21 400 - -
Phco6g02101 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Phco6g02101 419 CDD STKc_phototropin_like 53 397 - -
Phco6g02101 419 FunFam serine/threonine-protein kinase D6PK-like 275 398 - -
Phco6g02101 419 SUPERFAMILY Protein kinase-like (PK-like) 39 398 IPR011009 -
Phco6g02101 419 Gene3D Phosphorylase Kinase; domain 1 49 134 - -
Phco6g02101 419 Gene3D Transferase(Phosphotransferase) domain 1 276 398 - -
Phco6g02101 419 Pfam Protein kinase domain 52 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02101 419 Pfam Protein kinase domain 277 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02101 419 FunFam Serine/threonine-protein kinase OXI1 135 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02101 Phco-Chr6 41474694 41477229 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco6g02101 Pkinase 8.7e-33 CL0016