Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02092 ATGGGTGACCCATATGGGTTGCCGGAGGATCTCCGGCGTTTTATACCACCCAGAACCCATTTGAACCCTTCAAACACGCATCTACTTGAGCCACTGTGTCTTCACCATGGTCTCAGCGCTGTTGCTGCTGCTACCACAACTCCACCCAACACCTATGACCCCAACATGGTTGGGGACGTTTTCTTCCCTCGTGCCTTCACTCACTTTGCTCATCATCATGACTATTCCTCTTCTTCTGGTGTCCACCCTACTAATACTGCCACTGCGGCTGTCTCGGATCATGCATTCTGCAACATGGAGAGTGCAGAGAAAGGGTGGTTTGGGTTTGATTCCGGGAACAACAGGTGGCCTAGACAGGAGACCCTTTCGCTTCTAGAGATCAGATCTCGTCTTGATTGCAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAGATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAAGAGAAGTTTGAGAATTTGTACAAATATTACAAGAAGACGAAGGAAGGTAAAGCCAGTAGACAAGATGGGAAGCACTACAGGTTCTTCAGGCAGCTTGAAGCAATATGTGGAGACCAAGCAAACACAAATCATGCCTCAACTTCAGAGAAAGCCCAACGTGCTGGTGGAAACAATGCTAATATTCAAACACCTACCTTCACAGTTAACCAAGACCACAATGTCGATTCTAATAATAACCCCAAGTGCTCAGAGAGCCTCAGCATCACAAACTCATCTGAATTCGAGACATCCTCATCTGAAAACAACGAGGAGGATCTTTCAGCCATTGCATTCATGATGAGGCAGCCTAGGGAGAAGCAGAAAGCGTTGGATCAAAGACAAAGTGATCATAGGAGGTTAAGAAAAGGCTGGAGAGCCAAAGTGGAGGAGATAGTGGATTCCCACATGAGGAAGATTATAGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGCGTTGTTGAACAAAGAGAGCAAGAGATGGCATCTAAGGAGGAAGAAAGGAAGAGGAAAGAGTCAACGTGGTTTGACCAGCAGGTGCATGAACTCTGGGCTAAAGAGAAAGCATGGGTTGAAGCAAGAGATGCTGCATTGATAGAGGTTGTGAGGAAACATGTTGGGATAGGACTTGAAGCATTACCCCTGGATGAAGCTATGGTTGAAGAAGCAGCAAAAAAGAACAAGGGCCAAGGAAAGATTGACAGCAGTGAATTTCCCTCGGAGGGTGTGGATCAAAGAAGTAGCCGTAGGTGGACAGAAATGGAGATTGCAAATTTGATACAGCTAAGGACTGGTTTTGAGCAACGATTCAGAGAAAATGGGTACTTGGACAATGGCCTTTGGGATGAAATATCAGCTAAACTGGGTTGTTTGGGGTTTGATAGGAGTGGAAGTGAGTGCAAGCAAATATGGGATGAGATCAGCATCTCTCTGAGAAGGACAGTGGATGAGTGTGATGGTGGGAAAAGAAGGCCTTGGTATTTGGGACTTAAGGTGACGGATGATGATGAACTTTGA 1554 0.4569 MGDPYGLPEDLRRFIPPRTHLNPSNTHLLEPLCLHHGLSAVAAATTTPPNTYDPNMVGDVFFPRAFTHFAHHHDYSSSSGVHPTNTATAAVSDHAFCNMESAEKGWFGFDSGNNRWPRQETLSLLEIRSRLDCKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGDQANTNHASTSEKAQRAGGNNANIQTPTFTVNQDHNVDSNNNPKCSESLSITNSSEFETSSSENNEEDLSAIAFMMRQPREKQKALDQRQSDHRRLRKGWRAKVEEIVDSHMRKIIETQDAWMERMLSVVEQREQEMASKEEERKRKESTWFDQQVHELWAKEKAWVEARDAALIEVVRKHVGIGLEALPLDEAMVEEAAKKNKGQGKIDSSEFPSEGVDQRSSRRWTEMEIANLIQLRTGFEQRFRENGYLDNGLWDEISAKLGCLGFDRSGSECKQIWDEISISLRRTVDECDGGKRRPWYLGLKVTDDDEL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02092 517 CDD GT1 114 180 - -
Phco6g02092 517 SMART sant 112 175 IPR001005 -
Phco6g02092 517 SMART sant 426 489 IPR001005 -
Phco6g02092 517 Gene3D - 430 492 - -
Phco6g02092 517 Gene3D - 116 178 - -
Phco6g02092 517 Coils Coil 326 353 - -
Phco6g02092 517 ProSiteProfiles Myb-like domain profile. 114 173 IPR001005 -
Phco6g02092 517 PANTHER FI21293P1 78 504 - -
Phco6g02092 517 CDD GT1 428 493 - -
Phco6g02092 517 Pfam Myb/SANT-like DNA-binding domain 428 499 IPR044822 -
Phco6g02092 517 Pfam Myb/SANT-like DNA-binding domain 114 201 IPR044822 -
Phco6g02092 517 MobiDBLite consensus disorder prediction 209 268 - -
Phco6g02092 517 MobiDBLite consensus disorder prediction 405 424 - -
Phco6g02092 517 FunFam trihelix transcription factor PTL-like 116 178 - -
Phco6g02092 517 FunFam Trihelix transcription factor GT-2 430 492 - -
Phco6g02092 517 ProSiteProfiles Myb-like domain profile. 422 487 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02092 Phco-Chr6 41326901 41329323 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Phco6g02092 Myb_DNA-bind_4 7.3e-19 CL0123