Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02056 ATGGATCATGTTATTGGTGGAAAATTCAAGCTCGGTAGGAAGATTGGGAGTGGATCGTTTGGAGAGCTTTACTTAGGTGTTAATGTACAAAGTGGAGAAGAAGTGGCTGTCAAGCTAGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCTAAATTGTATATGCTTCTCCAAGGGGGAACTGGTATACCCCATCTAAAATGGTTTGGAAGTGAGGGTGACTACAATGTCATGGCTATTGACCTCCTTGGGCCAAGTCTTGAAGACTTGTTTAACTATTGTAATAGGAAATTATCTCTGAAAACAGTTCTGATGCTGGCAGATCAGCTTATAAACAGAGTTGAGTACATGCACTCCCGGGGTTTTCTGCATCGAGATATAAAGCCTGACAACTTTTTAATGGGTTTAGGCCGGAAGGCAAATCAGGTATACATAATTGATTATGGCCTTGCTAAAAAGTACCGGGATCTTCAAACACATAAGCATATACCATACAGGGAAAACAAAAACCTCACTGGAACTGCTCGTTATGCAAGTGTTAATACTCATCTGGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCTCTTGGTTATGTGCTCATGTATTTTTTGAGAGGAAGTCTCCCATGGCAAGGCTTGAAAGCTGGCACTAAAAAGCAAAAGTATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTATGCAAGTCCTATCCAATGGAATTCACATCATACTTCCACTATTGCCGATCGTTGCGGTTTGAAGATAAGCCCGATTACTCTTATCTTAAAAGACTCTTTCGGGATCTATTCATCCGAGAAGGGTATCAGTTTGACTATGTATTTGATTGGACAATGTTGAAGTATCCACAAATTGGATCCAGCTCTAGAGCTCGACCAAGTGGGAAACCAGTCATAAACCCAGGGCAATCAGGAGAACGGCCTTCAGCGGTACCAGATATTCGAGATAGATTCTCTGGTGCAGTTGAGGCATTTGCGAGGAGGAATGGCTCAGGACTTGGTCTGCATGGTGATCATTCTAGGCATAGGTCTTCCGATGATGTGCCATCGTCGTCCAAAGATGTGCAACCTGATTCTGAGAGGCCTCGTAGTTCTTCTCGTAATGGCAGTTCTTCAAAAAAGCCTGTCTTGTCAAGCAGCCGACCAAGCTCTTCTGGCGAGCCCAGCGAAGGCCGTGTTAGCCGACTGGTCTCAAGCAGTGGCAGACTATCAACAACTCAGAGACTTCAAGCTGGTTCTGAGTCTAAAACATCTCTAACTCGGGCTTCAGGGACAAGACTTGGCCGTGACGATGCCCTCAGGAGCTTTGAGCTCCTGTCACTTGGTACGGGAAAAAGGAAATGA 1383 0.4425 MDHVIGGKFKLGRKIGSGSFGELYLGVNVQSGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGSEGDYNVMAIDLLGPSLEDLFNYCNRKLSLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSYPMEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTMLKYPQIGSSSRARPSGKPVINPGQSGERPSAVPDIRDRFSGAVEAFARRNGSGLGLHGDHSRHRSSDDVPSSSKDVQPDSERPRSSSRNGSSSKKPVLSSSRPSSSGEPSEGRVSRLVSSSGRLSTTQRLQAGSESKTSLTRASGTRLGRDDALRSFELLSLGTGKRK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02056 460 SMART serkin_6 9 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02056 460 FunFam Casein kinase 1-like protein 1 327 - -
Phco6g02056 460 CDD STKc_CK1_delta_epsilon 8 282 - -
Phco6g02056 460 MobiDBLite consensus disorder prediction 375 437 - -
Phco6g02056 460 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Phco6g02056 460 FunFam Putative Casein kinase I 1 85 - -
Phco6g02056 460 PANTHER CASEIN KINASE-RELATED 9 401 - -
Phco6g02056 460 MobiDBLite consensus disorder prediction 299 326 - -
Phco6g02056 460 MobiDBLite consensus disorder prediction 347 374 - -
Phco6g02056 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Phco6g02056 460 Gene3D Transferase(Phosphotransferase) domain 1 1 320 - -
Phco6g02056 460 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02056 460 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02056 460 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Phco6g02056 460 MobiDBLite consensus disorder prediction 342 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02056 Phco-Chr6 40667929 40672560 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Phco6g02056 Pkinase 1.2e-25 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02056 6 40667929 40672560 Phco6g02056 6 40667929 40672560 ECH