Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02048 ATGGTGAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAGAAGGGTCCTTGGGCTCCCGAGGAAGATCAAATCCTCACATCTTACATCCAAAAACATGGCCATGGCAATTGGCGTGCCCTGCCAAAGCAAGCAGGCCTGTTAAGATGTGGGAAGAGTTGCAGACTGCGGTGGATTAACTATTTGAAGCCTGATATCAAGAGAGGGAATTTCACATCTGAAGAAGAAGAAACTATCCTTAAGCTGCATGAGACGCTGGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCCGGAAGAACTGACAATGAAATAAAAAATGTGTGGCACACCAATTTGAAGAAGAGGCTGCTGAAAGCAGACCAGTCCAGTTCAAATTCCAGAAGAGTCACAAAGCCCAAAATCAAACGTTCTGATTCCAATTCCAGCATCATAACTCAATCAGAACCTGCCAATTTTAATTTCAGAGAAATGGATTCAACATCTGCATGCACCACTTCTAGTGATTTTTCATCTGTCACAGTTGGTGACAGCAAAAATATCAAGTGTGAAGACATAGATTCTCTTGAGACAATGCCTGTGATTGACGAGAGTTTTTGGTCAGAACCAGCAATTGATGAAACACCTTCCATGTCACCACAATCCATGACAATCTCAAATCAGATGCAACTTCAATACCCTTTTACTAACTATGAGGAAACTTTCCAACCGAGTCATGCTTATGATTCAAACTTTGATGACGGCATGGATTTCTGGTATGACATATTCGCCAGGACCGCTGATTCCACAGAATTGCCAGACTTCTGA 804 0.4266 MVRAPCCEKMGLKKGPWAPEEDQILTSYIQKHGHGNWRALPKQAGLLRCGKSCRLRWINYLKPDIKRGNFTSEEEETILKLHETLGNRWSAIAAKLPGRTDNEIKNVWHTNLKKRLLKADQSSSNSRRVTKPKIKRSDSNSSIITQSEPANFNFREMDSTSACTTSSDFSSVTVGDSKNIKCEDIDSLETMPVIDESFWSEPAIDETPSMSPQSMTISNQMQLQYPFTNYEETFQPSHAYDSNFDDGMDFWYDIFARTADSTELPDF 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02048 267 CDD SANT 69 112 IPR001005 -
Phco6g02048 267 Gene3D - 69 148 - -
Phco6g02048 267 CDD SANT 16 61 IPR001005 -
Phco6g02048 267 Gene3D - 13 66 - -
Phco6g02048 267 FunFam Myb transcription factor 11 67 - -
Phco6g02048 267 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco6g02048 267 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
Phco6g02048 267 SMART sant 13 63 IPR001005 -
Phco6g02048 267 SMART sant 66 114 IPR001005 -
Phco6g02048 267 MobiDBLite consensus disorder prediction 136 150 - -
Phco6g02048 267 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Phco6g02048 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco6g02048 267 MobiDBLite consensus disorder prediction 118 150 - -
Phco6g02048 267 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco6g02048 267 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco6g02048 267 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco6g02048 267 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02048 Phco-Chr6 40523493 40525280 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco6g02048 Myb_DNA-binding 1.2e-13 CL0123