Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02032 ATGGAACCGCCATTGCAACAGCAACCCACCCCGCCGCCAACACCACGCTCCCTCATCATCCTCGGAAAATACCAGCTGACGCGCCTCCTCGGCCGTGGCAGCTTCGCCAAGGTCTACCAGGCACGATCCCTAATCGACGGCGCCACCTTCGCCGTCAAAATCATCGACAAGGCCAAAACCGTCGATGCCCGCATGGAGCCCCGCATAATCCGCGAGATCGACGCCATGCGCCGCCTCCACCACCACCCTAACATCCTTAAAATCCACGAGGTCATGGCCACGAAGACCAAAATCCACCTCATCGTGGAGCTCGCCACCGGTGGAGAGCTCTTCGCCAGAATCTCCCGTCGAGGCCGTTTGCCGGAGTCCACGGCGCGCCGGTACTTCCAGCAGCTGGTCTCCGCGCTCCGGTTCTGTCACCGGAACGGTGTGGCGCACCGCGACCTCAAGCCTCAGAACCTCCTCCTCGACGGCGAAGGCAACCTCAAGGTCTCCGACTTCGGCCTCTCCGCTCTGCCGGAGCATCTCAAGAACGGCCTTCTCCACACCGCATGCGGCACGCCAGCGTACACAGCGCCGGAGATCCTCCGCCAGAAAGGCGGCTACGACGGGTCCAAGGCCGACGCCTGGTCCTGCGGCCTCATTCTCTACGTCTTCCTCGCCGGCTACCTTCCGTTCGACGACACGAACATTCCGGCGATGTGCAAGAGGATTTCCCGGCGTGATTACCAGTTCCCTGACTGGATAACAAAACCGGCACGCTATGTTATACATAAATTACTGGACCCGAACCCGGAAACCAGAATGGGGTTGGAGGCTCTGTTTGGGAACTCGTGGTTCAAGAAATCATTAAGACCGGAAACGGCGGAGGAAAGCGCGTTTGGGTGGGATAACGTTTATGTGAAGGGTTGTTACTACGAAGGGGCTAAGTGTGCGGGTGTGAACGCGTTTGATATAATATCAATGTCTTCGGGTTTGAATTTAACGAGGTTGTTTGAAACGACGTCGGAGGGGGGTAGTAGAAGGGAAAAGAGATTCACTTCGAGTGCGCGCGTGGAGGTGGTGGAGGAGAAGGTTAAGGAAGTGGGTGGGGTTTTGGGGTTTAAGGTTGAGGCTGGGAAAACCATTAACGGTGCACTTGCCTTGTTAAAAGGAAAGGTGGCTTTGGTGTTTGAGGTGCTTCAGATTGTGCCTGATCAGCTTCTTTTGGTGGCTGTGAAGGTCGTGGAGGGTGGGTTAGAGTTTGAGGAGCATCATTGGGGCCATTGGAAAAATGCCTTGCAAGATCTCGTCCTTTCTTGGCACAACGATGAATCCTGA 1320 0.5644 MEPPLQQQPTPPPTPRSLIILGKYQLTRLLGRGSFAKVYQARSLIDGATFAVKIIDKAKTVDARMEPRIIREIDAMRRLHHHPNILKIHEVMATKTKIHLIVELATGGELFARISRRGRLPESTARRYFQQLVSALRFCHRNGVAHRDLKPQNLLLDGEGNLKVSDFGLSALPEHLKNGLLHTACGTPAYTAPEILRQKGGYDGSKADAWSCGLILYVFLAGYLPFDDTNIPAMCKRISRRDYQFPDWITKPARYVIHKLLDPNPETRMGLEALFGNSWFKKSLRPETAEESAFGWDNVYVKGCYYEGAKCAGVNAFDIISMSSGLNLTRLFETTSEGGSRREKRFTSSARVEVVEEKVKEVGGVLGFKVEAGKTINGALALLKGKVALVFEVLQIVPDQLLLVAVKVVEGGLEFEEHHWGHWKNALQDLVLSWHNDES 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02032 439 FunFam Non-specific serine/threonine protein kinase 15 302 - -
Phco6g02032 439 Pfam Protein kinase domain 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02032 439 Gene3D Transferase(Phosphotransferase) domain 1 17 305 - -
Phco6g02032 439 SMART serkin_6 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02032 439 SUPERFAMILY Protein kinase-like (PK-like) 20 286 IPR011009 -
Phco6g02032 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 379 - -
Phco6g02032 439 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Phco6g02032 439 ProSiteProfiles Protein kinase domain profile. 24 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02032 439 Pfam NAF domain 314 371 IPR004041 GO:0007165
Phco6g02032 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Phco6g02032 439 CDD CIPK_C 315 428 - -
Phco6g02032 439 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Phco6g02032 439 FunFam Non-specific serine/threonine protein kinase 17 109 - -
Phco6g02032 439 Gene3D Kinase associated domain 1, KA1 311 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02032 Phco-Chr6 40239917 40241236 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco6g02032 Pkinase 4.8e-65 CL0016