Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02010 ATGGCGTTTTCGGAACTGCTCCTATTGTTCTCTCTTGCGTTTTTGCTCTCGAACCCAACATGGGTGTGTGGGAATGGAGAGCTAAGAGCACTAATGGATATGAAAGCCAGTTTGGATCCAGAGAGCCTTTATCTACCGTCTTGGACTATCAATGGTGACCCATGTGATGGATATTTTGAAGGAGTGGCATGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGTAAGGGTCTCTCAGGGAAGCTTTCACCAGCCATTGCAGGGCTCAAGCATCTGACCGGACTCTACTTGCATTATAACTCTTTGTATGGAGACATACCAAGAGAGATTGCAAACTTGACTGAGCTTGTTGATTTGTATTTGAATGTAAACAATCTGTCTGGGGAAATCCCACGTGAGATAGCCAGCATGGAGAACTTGCAAGTTTTGCAGCTTTGTTATAATCGGTTGACTGGAAGCATTCCTACACAGCTAGGTGCTTTGAAAAAGCTGAGTGTTGTTGCATTGCAATCAAACATGTTAACTGGCGCTATCCCTGCCAGTCTAGGTGATTTGGGCATGCTGGCGAGGCTAGATTTGAGCTCTAATAATCTTTTTGGTTCCATTCCCACTAGCCTAGCTGAAGCTATTTCACTGAGAGTTTTGGATGTTCACAACAATACCCTTTCTGGGAATGTACCTCCTGCTCTGAAGAGACTTGATGATGGATTTCTGTATGAGTATAATCTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCAACGCTTCAGATCATGTCATTCCAAGCAGACCTGAACCTTATGGAGCAGCCACAAGAGATATCCCTGAAACTGCAAATGTGAAGTTACCATGCAATGGTACTCAGTGCCTTAATTCATCAAAATCAAATCAATCCACTTCAATTACTGTTGGCATATTTGTGGTTATAATTGCAATGTCTGCAATTGGTGTTTTGACATTCACACTGTATCGTCGGAGAAAACAAAAGCTTGGAGGTTCTTTTCATATCAGTGACAATCGTCAAAGTACTGAGGAGGCCATGGGTGTATATAGGAAAAATGGATCTCCTTTGGTCAGCCTTGAGTACTCTACTGGATGGGACCCTTTGGCTGAGAGTAGAAATTTCAGTGGGTATAGCCAAGATATGTTCCAGAGTTTGAGGTTCAATTTGGAAGAAGTGGAGTCTGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAATAGCTTTAGTGCAACATATAGAGGAGTTTTAAGAGATGGATCCGTTGTTGCTGTGAAGAGCATAAGTAAAACTAGTTGCAAGTCGGATGAAGCTGAGTTTATGAAGGGACTGAACATGTTGACCTCATTGAGGAATGATAATGTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGTGAATGCTTTCTGATTTATGATTTTGTTTCTAATGGAAACCTTTCACGCCTTCTTGATGTTAAGGAAGGAGATGGTGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGGGTTGCAAAAGGTATGGCATATTTACATGCATACAAAGCAAACAAACCAGTTATTGTTCACCAAAACATCTCAGCTGACAAAGTCCTCATTGATCAGCGGTACAATCCATTGTTGGCAGGTTCTGGCCTGTACAAGCTTCTTACTAATGATATTGTCTTCTCTGCACTCAAGGGTAGTGCAGCAAAGGGTTACCTGGCTCCTGAATATGCCACTACTGGGAGGCTTTCGCAGACAAGTGATGTCTATGCTTTTGGGGTGCTGCTTTTCCAGATCCTTTCAGGGAAGCAAGAGATCACTAGCTCAATAAGGCTTGCTGCGGAGTCCTCCAAGTTCCAAGAATTTATGGACCCAAATCTTCATGGAAGATACTTTGAATATGAAGCAGCTAAACTGGCAAAAATAGCTTTGCTTTGCTCCCATGAGTCTCCTTTCGAGAGGCCAGCCATGGAAGCCATTGTTCAAGAACTGGGGAACTGTAGTAGCTGCATCTGA 2034 0.4307 MAFSELLLLFSLAFLLSNPTWVCGNGELRALMDMKASLDPESLYLPSWTINGDPCDGYFEGVACNEKGQVANVSLQGKGLSGKLSPAIAGLKHLTGLYLHYNSLYGDIPREIANLTELVDLYLNVNNLSGEIPREIASMENLQVLQLCYNRLTGSIPTQLGALKKLSVVALQSNMLTGAIPASLGDLGMLARLDLSSNNLFGSIPTSLAEAISLRVLDVHNNTLSGNVPPALKRLDDGFLYEYNLGLCGVGFSSLKACNASDHVIPSRPEPYGAATRDIPETANVKLPCNGTQCLNSSKSNQSTSITVGIFVVIIAMSAIGVLTFTLYRRRKQKLGGSFHISDNRQSTEEAMGVYRKNGSPLVSLEYSTGWDPLAESRNFSGYSQDMFQSLRFNLEEVESATQYFSELNLLGKNSFSATYRGVLRDGSVVAVKSISKTSCKSDEAEFMKGLNMLTSLRNDNVVRLRGFCCSRGRGECFLIYDFVSNGNLSRLLDVKEGDGEVLEWSTRVSIVKGVAKGMAYLHAYKANKPVIVHQNISADKVLIDQRYNPLLAGSGLYKLLTNDIVFSALKGSAAKGYLAPEYATTGRLSQTSDVYAFGVLLFQILSGKQEITSSIRLAAESSKFQEFMDPNLHGRYFEYEAAKLAKIALLCSHESPFERPAMEAIVQELGNCSSCI 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02010 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 671 - -
Phco6g02010 677 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Phco6g02010 677 Pfam Protein tyrosine and serine/threonine kinase 409 670 IPR001245 GO:0004672|GO:0006468
Phco6g02010 677 FunFam Leucine-rich repeat receptor-like kinase 26 135 - -
Phco6g02010 677 FunFam Protein NSP-INTERACTING KINASE 2 376 483 - -
Phco6g02010 677 Gene3D Ribonuclease Inhibitor 21 307 IPR032675 -
Phco6g02010 677 FunFam Protein NSP-INTERACTING KINASE 2 484 674 - -
Phco6g02010 677 SUPERFAMILY Protein kinase-like (PK-like) 380 670 IPR011009 -
Phco6g02010 677 Gene3D Transferase(Phosphotransferase) domain 1 484 676 - -
Phco6g02010 677 SUPERFAMILY L domain-like 23 234 - -
Phco6g02010 677 ProSiteProfiles Protein kinase domain profile. 405 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02010 677 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Phco6g02010 677 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Phco6g02010 677 Gene3D Phosphorylase Kinase; domain 1 374 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02010 Phco-Chr6 39818372 39821134 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Phco6g02010 PK_Tyr_Ser-Thr 1.8e-34 CL0016