Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02008 ATGGCTTCTTCTAGCTACTCCAATTCTCCATGTGCAGCCTGCAAGTTTTTGAGGAGGAGGTGCATGCCAGATTGCCTTTTCGCCCCATATTTCCCTCCAGAGGAGCCTCAGAAGTTTGTGAATGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGATCCTGAACGAGGTGCAACCCTATCAGAGAGAGGACACTGTGAACTCTCTGGCCTATGAAGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCTATTTCAGTGCTCCAAAGACAAGTTCTTAAGCTCCAGAAGGAACTTGATGCTACAAATGCTGATTTGATCCGCTACAGCACTTGCAATGAAATGCCAAATAGTAGTAATCATCATGAAGGAAGAAGCAAGATGATTAGTGATGATGATGGTGGTGGTTCCTCACATGGTTTAAGTTTCTATTATGCTTCTTCTTCTGCTAATTGGAACAATGGTCCTTCTGATGAGAATGGGTACCCCAGAGGAGATATATAA 516 0.4419 MASSSYSNSPCAACKFLRRRCMPDCLFAPYFPPEEPQKFVNVHKIFGASNVSKILNEVQPYQREDTVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYSTCNEMPNSSNHHEGRSKMISDDDGGGSSHGLSFYYASSSANWNNGPSDENGYPRGDI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02008 171 Coils Coil 89 109 - -
Phco6g02008 171 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Phco6g02008 171 MobiDBLite consensus disorder prediction 145 162 - -
Phco6g02008 171 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Phco6g02008 171 MobiDBLite consensus disorder prediction 118 171 - -
Phco6g02008 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02008 Phco-Chr6 39756163 39756678 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco6g02008 LOB 2.2e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02008 6 39756163 39756678 Phco6g02008 6 39756163 39756678 ECH