Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g02006 ATGTCTGGGTTGGAGGAATTGAGGAAAAAGCTTGCACCTTTATTCGATGCCGAGAAGGGTTTCTCATCAAGTTCAACCTTGGACCCCTGTGATTCTTACACATTCTCAGATGGTGGAACTGTGAACTTGCTGAGTAGATCATATGGGGTGTACAATATCAACGAGCTTGGGTTGCAGAAGTGCACATCTTCAAGGTCTTTGGATGTAACTGATCAGAGTGAGAAAACGTACAAGTGTGCTTCCCAAGAAATGAGGATATTTGGAGCAATTGGTAGTGGTGCCAGTAGTGTTGTGCAGAGAGCCATGCATATACCAACACATAGGATTCTGGCGCTGAAGAAGATCAATATCTTTGAGAAGGAGAAAAGGCAGCAGCTCCTTACTGAGATAAGGACATTGTGTGAAGCACCTTGTTATGAGGGTCTTGTAGAATTTCATGGAGCATTTTACACCCCAGATTCTGGACAGATAAGCATAGCTTTGGAGTATATGGATGGAGGATCACTTGCAGATATCTTGCGAATGAATAGAAGGATACCTGAACCTATTCTATCGTTCATGTTTCAGAAGCTCCTACACGGTCTAAGCTATCTGCATGGAGTCAGACATCTAGTTCACAGAGACATAAAGCCGGCCAATCTATTGGTAAATTTGAAGGGAGAGCCAAAAATTACTGATTTTGGCATTAGTGCTGGCTTAGAGAATTCAGTGGCAATGTGTGCTACATTTGTTGGAACTGTTACATACATGTCACCTGAGAGGATTCGAAATGAAAGCTATTCTTATCCTGCCGATATTTGGAGCCTTGGTCTTGCCCTTCTAGAGTGTGGGACTGGAGAATTCCCATATACAGCTAATGAAGGTCCTGTGAATCTTATGTTGCAGATCCTGGATGATCCATCACCATCACCATCAAAAAACAAGTTTTCACCAGAATTCTGCTCCTTTGTTGATGCTTGTCTGCAAAAGGATCCAGATAATAGGCCAACAGCAGAGCAGCTGCTTTTGAACCCTTTTATCACAAAGTATGAGAATGAAAAGGTAGATTTAGCCGGATTTGTTCGAAGCGTTTTTGATCCTACACAAAGAATGAAGGACTTGGCAGACATGTTGACAATACATTATTACTTGCTATTTGATGGACCTGATGATCTGTGGCAACATACAAGGAACTTATATAACGAAACCTCGATTTTCAGTTTCTCTGGAAAACAACACTGTGGTCCAAATAACATCTTTGCATCTCTATCAAGTATTAGAGCTACACTGGTTGGTGAGTGGCCTCCTGAAAAGTTGGTGCATGTTGTTGAGAAGCTTCAATGCCGTGCCCATGGTGAAGATGGAGTTGCAATCAGAGTTTCAGGGTCCTTTATGATTGGAAACCAGTTCCTGATATGTGGAGATGGCATTCAAGTTGAGGGGTTGCCAAACTTCAAGGATCTTGGAATTGATATTGCTAACAAAAGAATGGGAACTTTTCATGAACAATTCTTGGTGGAACCAACAAGTTTTATTGGATGCTATTCCATTGTGAAACAAGAGCTATACATTAATCAGTAA 1560 0.4154 MSGLEELRKKLAPLFDAEKGFSSSSTLDPCDSYTFSDGGTVNLLSRSYGVYNINELGLQKCTSSRSLDVTDQSEKTYKCASQEMRIFGAIGSGASSVVQRAMHIPTHRILALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMDGGSLADILRMNRRIPEPILSFMFQKLLHGLSYLHGVRHLVHRDIKPANLLVNLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKNKFSPEFCSFVDACLQKDPDNRPTAEQLLLNPFITKYENEKVDLAGFVRSVFDPTQRMKDLADMLTIHYYLLFDGPDDLWQHTRNLYNETSIFSFSGKQHCGPNNIFASLSSIRATLVGEWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFMIGNQFLICGDGIQVEGLPNFKDLGIDIANKRMGTFHEQFLVEPTSFIGCYSIVKQELYINQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g02006 519 ProSiteProfiles Protein kinase domain profile. 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02006 519 Gene3D Transferase(Phosphotransferase) domain 1 166 365 - -
Phco6g02006 519 CDD PKc_MAPKK_plant_like 85 345 - -
Phco6g02006 519 ProSiteProfiles Nuclear transport factor 2 domain profile. 367 517 IPR018222 -
Phco6g02006 519 Gene3D - 366 517 - -
Phco6g02006 519 Gene3D Phosphorylase Kinase; domain 1 52 165 - -
Phco6g02006 519 Pfam Protein kinase domain 88 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco6g02006 519 SUPERFAMILY Protein kinase-like (PK-like) 86 375 IPR011009 -
Phco6g02006 519 ProSitePatterns Protein kinases ATP-binding region signature. 90 113 IPR017441 GO:0005524
Phco6g02006 519 SUPERFAMILY NTF2-like 365 462 IPR032710 -
Phco6g02006 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Phco6g02006 519 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 23 397 - -
Phco6g02006 519 FunFam mitogen-activated protein kinase kinase 3 166 362 - -
Phco6g02006 519 FunFam Mitogen-activated protein kinase kinase 3 364 518 - -
Phco6g02006 519 FunFam mitogen-activated protein kinase kinase 3 56 165 - -
Phco6g02006 519 SMART serkin_6 84 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g02006 Phco-Chr6 39734893 39738651 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Phco6g02006 Pkinase 5.3e-58 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g02006 6 39734893 39738651 Phco6g02006 6 39734893 39738651 ECH